Analysis of interatomic Contacts of Structural Units in PDB entry:
3MZW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MZW entry

There are 2 chains in PDB entry 3MZW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1CYS 578
B
 ASN 6LYS 58
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3MZW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 29Right-handed alpha
Helix 2
2
A
49 53Right-handed 310
Helix 3
3
A
85 88Right-handed 310
Helix 4
4
A
141 145Right-handed 310
Helix 5
5
A
146 151Right-handed alpha
Helix 6
6
A
152 156Right-handed 310
Helix 7
7
A
186 190Right-handed 310
Helix 8
8
A
209 213Right-handed 310
Helix 9
9
A
325 329Right-handed 310
Helix 10
10
A
338 343Right-handed 310
Helix 11
11
A
355 360Right-handed alpha
Helix 12
12
A
362 366Right-handed 310
Helix 13
13
A
371 381Right-handed 310
Helix 14
14
A
400 404Right-handed 310
Helix 15
15
A
414 417Right-handed 310
Helix 16
16
A
459 464Right-handed alpha
Helix 17
17
A
478 485Right-handed alpha
Helix 18
18
A
493 497Right-handed 310
Helix 19
19
B
6 19Right-handed alpha
Helix 20
20
B
23 37Right-handed alpha
Helix 21
21
B
40 55Right-handed alpha
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There are 12 sheets in PDB entry 3MZW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
33 35parallel
Strand 3
A
57 58parallel
Strand 4
A
79 80parallel
Strand 5
A
125 126parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
62 65parallel
Strand 3
A
90 95parallel
Strand 4
A
130 134parallel
Strand 5
A
160 162parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 238first strand
Strand 2
A
241 243anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 252first strand
Strand 2
A
259 261anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 269first strand
Strand 2
A
272 274anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
289 290anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 301first strand
Strand 2
A
307 311anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
347 349parallel
Strand 3
A
383 384parallel
Strand 4
A
408 409parallel
Strand 5
A
438 439parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 354first strand
Strand 2
A
388 390parallel
Strand 3
A
419 424parallel
Strand 4
A
443 447parallel
Strand 5
A
471 474parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 514first strand
Strand 2
A
517 519anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 534first strand
Strand 2
A
537 540anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
568 570first strand
Strand 2
A
573 575anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il