Analysis of interatomic Contacts of Structural Units in PDB entry:
3N04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3N04 entry

There are 2 chains in PDB entry 3N04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 0	LYS 663
B	ALA 0	ILE 552

There are 45 helices in PDB entry 3N04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	77	81	Right-handed 310
Helix 2	2	A	139	152	Right-handed alpha
Helix 3	3	A	158	163	Right-handed 310
Helix 4	4	A	173	187	Right-handed alpha
Helix 5	5	A	197	201	Right-handed 310
Helix 6	6	A	216	226	Right-handed alpha
Helix 7	7	A	245	254	Right-handed alpha
Helix 8	8	A	282	292	Right-handed alpha
Helix 9	9	A	293	298	Right-handed alpha
Helix 10	10	A	317	333	Right-handed alpha
Helix 11	11	A	339	350	Right-handed alpha
Helix 12	12	A	353	358	Right-handed alpha
Helix 13	13	A	372	376	Right-handed 310
Helix 14	14	A	377	394	Right-handed alpha
Helix 15	15	A	409	413	Right-handed 310
Helix 16	16	A	426	441	Right-handed alpha
Helix 17	17	A	458	470	Right-handed alpha
Helix 18	18	A	493	521	Right-handed alpha
Helix 19	19	A	528	533	Right-handed alpha
Helix 20	20	A	538	542	Right-handed 310
Helix 21	21	A	621	625	Right-handed 310
Helix 22	22	A	654	656	Right-handed 310
Helix 23	23	B	77	81	Right-handed 310
Helix 24	24	B	139	151	Right-handed alpha
Helix 25	25	B	158	163	Right-handed 310
Helix 26	26	B	173	186	Right-handed alpha
Helix 27	27	B	197	201	Right-handed 310
Helix 28	28	B	216	226	Right-handed alpha
Helix 29	29	B	245	254	Right-handed alpha
Helix 30	30	B	282	292	Right-handed alpha
Helix 31	31	B	293	298	Right-handed alpha
Helix 32	32	B	317	333	Right-handed alpha
Helix 33	33	B	339	350	Right-handed alpha
Helix 34	34	B	353	358	Right-handed alpha
Helix 35	35	B	372	376	Right-handed 310
Helix 36	36	B	377	394	Right-handed alpha
Helix 37	37	B	409	413	Right-handed 310
Helix 38	38	B	425	441	Right-handed alpha
Helix 39	39	B	458	470	Right-handed alpha
Helix 40	40	B	487	491	Right-handed 310
Helix 41	41	B	494	521	Right-handed alpha
Helix 42	42	B	529	533	Right-handed alpha
Helix 43	43	B	538	542	Right-handed 310
Helix 44	44	B	621	625	Right-handed 310
Helix 45	45	B	654	656	Right-handed 310

There are 22 sheets in PDB entry 3N04. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	7	first strand
Strand 2	A	130	135	anti-parallel
Strand 3	A	99	104	anti-parallel
Strand 4	A	90	94	anti-parallel
Strand 5	A	49	52	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	38	43	anti-parallel
Strand 3	A	120	125	anti-parallel
Strand 4	A	109	113	anti-parallel
Strand 5	A	65	69	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	406	407	parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	446	449	first strand
Strand 2	A	415	420	parallel
Strand 3	A	400	403	parallel
Strand 4	A	303	307	parallel
Strand 5	A	230	236	parallel
Strand 6	A	193	196	parallel
Strand 7	A	165	168	parallel
Strand 8	A	476	479	parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	240	first strand
Strand 2	A	273	276	anti-parallel
Strand 3	A	268	270	anti-parallel
Strand 4	A	315	316	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	364	first strand
Strand 2	A	367	370	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	454	first strand
Strand 2	A	481	482	parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	527	first strand
Strand 2	A	546	548	anti-parallel
Strand 3	A	552	554	anti-parallel
Strand 4	A	603	608	anti-parallel
Strand 5	A	573	578	anti-parallel
Strand 6	A	584	589	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	569	first strand
Strand 2	A	592	597	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	612	615	first strand
Strand 2	A	631	634	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	639	643	first strand
Strand 2	A	658	662	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	7	first strand
Strand 2	B	130	135	anti-parallel
Strand 3	B	99	104	anti-parallel
Strand 4	B	90	94	anti-parallel
Strand 5	B	49	52	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	33	first strand
Strand 2	B	38	43	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	109	113	anti-parallel
Strand 5	B	65	69	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	B	406	407	parallel

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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	449	first strand
Strand 2	B	415	420	parallel
Strand 3	B	400	403	parallel
Strand 4	B	303	307	parallel
Strand 5	B	230	236	parallel
Strand 6	B	193	196	parallel
Strand 7	B	165	168	parallel
Strand 8	B	476	479	parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	240	first strand
Strand 2	B	273	276	anti-parallel
Strand 3	B	268	270	anti-parallel
Strand 4	B	315	316	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	364	first strand
Strand 2	B	367	370	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	454	first strand
Strand 2	B	481	482	parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	526	528	first strand
Strand 2	B	546	548	anti-parallel
Strand 3	B	552	554	anti-parallel
Strand 4	B	603	608	anti-parallel
Strand 5	B	573	578	anti-parallel
Strand 6	B	584	589	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	569	first strand
Strand 2	B	592	597	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	612	615	first strand
Strand 2	B	631	634	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	639	643	first strand
Strand 2	B	658	662	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3N04

Analysis of interatomic Contacts of Structural Units in PDB entry:
3N04