Analysis of interatomic Contacts of Structural Units in PDB entry:
3N05


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3N05 entry

There are 2 chains in PDB entry 3N05 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0HIS 583
B
 SER 0HIS 583
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3N05. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 33Right-handed alpha
Helix 2
2
A
51 56Right-handed 310
Helix 3
3
A
57 78Right-handed alpha
Helix 4
4
A
135 140Right-handed alpha
Helix 5
5
A
162 166Right-handed 310
Helix 6
6
A
169 177Right-handed alpha
Helix 7
7
A
196 210Right-handed alpha
Helix 8
8
A
302 321Right-handed alpha
Helix 9
9
A
334 349Right-handed alpha
Helix 10
10
A
364 379Right-handed alpha
Helix 11
11
A
387 399Right-handed alpha
Helix 12
12
A
402 425Right-handed alpha
Helix 13
13
A
433 440Right-handed alpha
Helix 14
14
A
459 477Right-handed alpha
Helix 15
15
A
484 489Right-handed alpha
Helix 16
16
A
508 521Right-handed alpha
Helix 17
17
A
525 532Right-handed alpha
Helix 18
18
A
535 549Right-handed alpha
Helix 19
19
A
549 555Right-handed alpha
Helix 20
20
B
16 33Right-handed alpha
Helix 21
21
B
51 56Right-handed 310
Helix 22
22
B
57 78Right-handed alpha
Helix 23
23
B
135 140Right-handed alpha
Helix 24
24
B
162 166Right-handed 310
Helix 25
25
B
169 176Right-handed alpha
Helix 26
26
B
196 210Right-handed alpha
Helix 27
27
B
302 321Right-handed alpha
Helix 28
28
B
334 349Right-handed alpha
Helix 29
29
B
364 377Right-handed alpha
Helix 30
30
B
387 398Right-handed alpha
Helix 31
31
B
401 425Right-handed alpha
Helix 32
32
B
433 440Right-handed alpha
Helix 33
33
B
459 476Right-handed alpha
Helix 34
34
B
484 489Right-handed alpha
Helix 35
35
B
508 520Right-handed alpha
Helix 36
36
B
525 533Right-handed alpha
Helix 37
37
B
535 549Right-handed alpha
Helix 38
38
B
549 555Right-handed alpha
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There are 8 sheets in PDB entry 3N05. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 124first strand
Strand 2
A
107 115anti-parallel
Strand 3
A
85 92anti-parallel
Strand 4
A
38 40parallel
Strand 5
A
1 9parallel
Strand 6
A
250 258anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 243first strand
Strand 2
A
232 234anti-parallel
Strand 3
A
212 217anti-parallel
Strand 4
A
181 186parallel
Strand 5
A
154 160parallel
Strand 6
A
145 151anti-parallel
Strand 7
A
275 280parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 222first strand
Strand 2
A
225 228anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 384first strand
Strand 2
A
353 357parallel
Strand 3
A
327 330parallel
Strand 4
A
427 428parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 124first strand
Strand 2
B
107 115anti-parallel
Strand 3
B
85 92anti-parallel
Strand 4
B
38 40parallel
Strand 5
B
4 9parallel
Strand 6
B
250 255anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 243first strand
Strand 2
B
232 234anti-parallel
Strand 3
B
212 217anti-parallel
Strand 4
B
181 186parallel
Strand 5
B
154 160parallel
Strand 6
B
145 151anti-parallel
Strand 7
B
275 280parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 222first strand
Strand 2
B
225 228anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 384first strand
Strand 2
B
353 357parallel
Strand 3
B
327 331parallel
Strand 4
B
427 428parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il