Analysis of interatomic Contacts of Structural Units in PDB entry:
3N07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3N07 entry

There are 4 chains in PDB entry 3N07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2HIS 180
B
 SER 2LEU 177
C
 SER 2LEU 177
D
 SER 3VAL 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 3N07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 22Right-handed alpha
Helix 2
2
A
54 65Right-handed alpha
Helix 3
3
A
77 87Right-handed alpha
Helix 4
4
A
98 111Right-handed alpha
Helix 5
5
A
113 115Right-handed 310
Helix 6
6
A
123 125Right-handed 310
Helix 7
7
A
126 131Right-handed alpha
Helix 8
8
A
143 150Right-handed alpha
Helix 9
9
A
161 174Right-handed alpha
Helix 10
10
B
13 23Right-handed alpha
Helix 11
11
B
53 65Right-handed alpha
Helix 12
12
B
77 88Right-handed alpha
Helix 13
13
B
98 111Right-handed alpha
Helix 14
14
B
113 115Right-handed 310
Helix 15
15
B
123 125Right-handed 310
Helix 16
16
B
126 131Right-handed alpha
Helix 17
17
B
143 150Right-handed alpha
Helix 18
18
B
161 174Right-handed alpha
Helix 19
19
C
13 22Right-handed alpha
Helix 20
20
C
52 65Right-handed alpha
Helix 21
21
C
77 88Right-handed alpha
Helix 22
22
C
98 111Right-handed alpha
Helix 23
23
C
113 115Right-handed 310
Helix 24
24
C
123 125Right-handed 310
Helix 25
25
C
126 131Right-handed alpha
Helix 26
26
C
143 150Right-handed alpha
Helix 27
27
C
161 174Right-handed alpha
Helix 28
28
D
13 22Right-handed alpha
Helix 29
29
D
53 65Right-handed alpha
Helix 30
30
D
77 88Right-handed alpha
Helix 31
31
D
98 111Right-handed alpha
Helix 32
32
D
113 115Right-handed 310
Helix 33
33
D
123 125Right-handed 310
Helix 34
34
D
126 131Right-handed alpha
Helix 35
35
D
143 150Right-handed alpha
Helix 36
36
D
161 174Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 3N07. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
11 12anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 93first strand
Strand 2
A
68 72parallel
Strand 3
A
25 28parallel
Strand 4
A
117 121parallel
Strand 5
A
135 138parallel
Strand 6
A
152 153parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
47 48anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
11 12anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 93first strand
Strand 2
B
68 72parallel
Strand 3
B
25 28parallel
Strand 4
B
117 121parallel
Strand 5
B
135 138parallel
Strand 6
B
152 153parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 48first strand
Strand 2
C
38 42anti-parallel
Strand 3
B
47 52anti-parallel
Strand 4
B
38 42anti-parallel
Strand 5
D
47 52anti-parallel
Strand 6
D
40 41anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 6first strand
Strand 2
C
11 12anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 93first strand
Strand 2
C
68 72parallel
Strand 3
C
25 28parallel
Strand 4
C
117 121parallel
Strand 5
C
135 138parallel
Strand 6
C
152 153parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 6first strand
Strand 2
D
11 12anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
91 93first strand
Strand 2
D
68 72parallel
Strand 3
D
25 28parallel
Strand 4
D
117 121parallel
Strand 5
D
135 138parallel
Strand 6
D
152 153parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il