Analysis of interatomic Contacts of Structural Units in PDB entry:
3N0T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3N0T entry

There are 3 chains in PDB entry 3N0T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 28	GLU 479
B	ASP 28	GLU 479
C	ASP 28	TRP 420

There are 73 helices in PDB entry 3N0T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	80	88	Right-handed alpha
Helix 2	2	A	89	99	Right-handed alpha
Helix 3	3	A	116	120	Right-handed 310
Helix 4	4	A	130	150	Right-handed alpha
Helix 5	5	A	162	175	Right-handed alpha
Helix 6	6	A	188	193	Right-handed alpha
Helix 7	7	A	199	213	Right-handed alpha
Helix 8	8	A	213	233	Right-handed alpha
Helix 9	9	A	235	244	Right-handed alpha
Helix 10	10	A	251	272	Right-handed alpha
Helix 11	11	A	287	298	Right-handed alpha
Helix 12	12	A	301	315	Right-handed alpha
Helix 13	13	A	341	352	Right-handed alpha
Helix 14	14	A	374	387	Right-handed alpha
Helix 15	15	A	393	400	Right-handed alpha
Helix 16	16	A	420	424	Right-handed 310
Helix 17	17	A	444	448	Right-handed 310
Helix 18	18	A	455	477	Right-handed alpha
Helix 19	19	B	80	88	Right-handed alpha
Helix 20	20	B	88	99	Right-handed alpha
Helix 21	21	B	116	120	Right-handed 310
Helix 22	22	B	130	150	Right-handed alpha
Helix 23	23	B	162	175	Right-handed alpha
Helix 24	24	B	188	193	Right-handed alpha
Helix 25	25	B	199	213	Right-handed alpha
Helix 26	26	B	213	233	Right-handed alpha
Helix 27	27	B	235	244	Right-handed alpha
Helix 28	28	B	251	272	Right-handed alpha
Helix 29	29	B	287	298	Right-handed alpha
Helix 30	30	B	301	315	Right-handed alpha
Helix 31	31	B	341	352	Right-handed alpha
Helix 32	32	B	374	387	Right-handed alpha
Helix 33	33	B	393	400	Right-handed alpha
Helix 34	34	B	420	424	Right-handed 310
Helix 35	35	B	444	448	Right-handed 310
Helix 36	36	B	455	479	Right-handed alpha
Helix 37	37	C	80	88	Right-handed alpha
Helix 38	38	C	88	99	Right-handed alpha
Helix 39	39	C	116	122	Right-handed 310
Helix 40	40	C	130	149	Right-handed alpha
Helix 41	41	C	162	175	Right-handed alpha
Helix 42	42	C	190	194	Right-handed 310
Helix 43	43	C	199	211	Right-handed alpha
Helix 44	44	C	213	234	Right-handed alpha
Helix 45	45	C	235	244	Right-handed alpha
Helix 46	46	C	251	272	Right-handed alpha
Helix 47	47	C	287	299	Right-handed alpha
Helix 48	48	C	301	315	Right-handed alpha
Helix 49	49	C	324	329	Right-handed alpha
Helix 50	50	C	341	351	Right-handed alpha
Helix 51	51	C	374	386	Right-handed alpha
Helix 52	52	C	393	400	Right-handed alpha
Helix 53	53	C	420	424	Right-handed 310
Helix 54	54	C	455	477	Right-handed alpha
Helix 55	55	D	80	86	Right-handed alpha
Helix 56	56	D	89	99	Right-handed alpha
Helix 57	57	D	116	122	Right-handed 310
Helix 58	58	D	130	149	Right-handed alpha
Helix 59	59	D	162	175	Right-handed alpha
Helix 60	60	D	188	193	Right-handed alpha
Helix 61	61	D	199	213	Right-handed alpha
Helix 62	62	D	213	234	Right-handed alpha
Helix 63	63	D	235	244	Right-handed alpha
Helix 64	64	D	251	272	Right-handed alpha
Helix 65	65	D	287	299	Right-handed alpha
Helix 66	66	D	301	315	Right-handed alpha
Helix 67	67	D	324	329	Right-handed alpha
Helix 68	68	D	341	354	Right-handed alpha
Helix 69	69	D	374	387	Right-handed alpha
Helix 70	70	D	393	400	Right-handed alpha
Helix 71	71	D	420	424	Right-handed 310
Helix 72	72	D	444	448	Right-handed 310
Helix 73	73	D	455	477	Right-handed alpha

There are 8 sheets in PDB entry 3N0T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	39	first strand
Strand 2	A	52	60	anti-parallel
Strand 3	A	101	105	anti-parallel
Strand 4	A	71	75	parallel
Strand 5	A	156	161	parallel
Strand 6	A	181	185	parallel
Strand 7	A	410	415	parallel
Strand 8	A	433	438	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	279	first strand
Strand 2	A	283	284	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	39	first strand
Strand 2	B	52	60	anti-parallel
Strand 3	B	101	105	anti-parallel
Strand 4	B	71	75	parallel
Strand 5	B	156	161	parallel
Strand 6	B	181	185	parallel
Strand 7	B	410	415	parallel
Strand 8	B	433	438	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	279	first strand
Strand 2	B	283	284	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	39	first strand
Strand 2	C	52	60	anti-parallel
Strand 3	C	101	105	anti-parallel
Strand 4	C	71	75	parallel
Strand 5	C	156	161	parallel
Strand 6	C	181	185	parallel
Strand 7	C	410	415	parallel
Strand 8	C	433	438	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	279	first strand
Strand 2	C	283	284	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	39	first strand
Strand 2	D	52	60	anti-parallel
Strand 3	D	101	105	anti-parallel
Strand 4	D	71	75	parallel
Strand 5	D	156	161	parallel
Strand 6	D	181	185	parallel
Strand 7	D	410	415	parallel
Strand 8	D	433	438	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	279	first strand
Strand 2	D	283	284	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3N0T

Analysis of interatomic Contacts of Structural Units in PDB entry:
3N0T