Analysis of interatomic Contacts of Structural Units in PDB entry:
3N28


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3N28 entry

There is 1 chain in PDB entry 3N28 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3LYS 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3N28. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 7Right-handed 310
Helix 2
2
A
14 19Right-handed alpha
Helix 3
3
A
20 21Right-handed 310
Helix 4
4
A
22 26Right-handed 310
Helix 5
5
A
31 35Right-handed 310
Helix 6
6
A
45 57Right-handed alpha
Helix 7
7
A
81 92Right-handed alpha
Helix 8
8
A
116 132Right-handed alpha
Helix 9
9
A
133 146Right-handed alpha
Helix 10
10
A
150 161Right-handed alpha
Helix 11
11
A
168 175Right-handed alpha
Helix 12
12
A
182 193Right-handed alpha
Helix 13
13
A
205 216Right-handed alpha
Helix 14
14
A
242 258Right-handed alpha
Helix 15
15
A
260 262Right-handed 310
Helix 16
16
A
270 272Right-handed 310
Helix 17
17
A
273 280Right-handed alpha
Helix 18
18
A
289 294Right-handed alpha
Helix 19
19
A
305 319Right-handed alpha
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There are 2 sheets in PDB entry 3N28. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
62 68anti-parallel
Strand 3
A
71 76anti-parallel
Strand 4
A
37 41anti-parallel
Strand 5
A
94 97anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 237first strand
Strand 2
A
219 228anti-parallel
Strand 3
A
196 204parallel
Strand 4
A
109 112parallel
Strand 5
A
264 268parallel
Strand 6
A
282 286parallel
Strand 7
A
298 300parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il