Analysis of interatomic Contacts of Structural Units in PDB entry:
3N29


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3N29 entry

There are 2 chains in PDB entry 3N29 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 2ASN 382
B
 ILE 6ASN 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3N29. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 33Right-handed alpha
Helix 2
2
A
45 47Right-handed 310
Helix 3
3
A
48 56Right-handed alpha
Helix 4
4
A
63 74Right-handed alpha
Helix 5
5
A
86 97Right-handed alpha
Helix 6
6
A
104 112Right-handed alpha
Helix 7
7
A
113 115Right-handed 310
Helix 8
8
A
148 153Right-handed 310
Helix 9
9
A
172 188Right-handed alpha
Helix 10
10
A
189 191Right-handed 310
Helix 11
11
A
211 227Right-handed alpha
Helix 12
12
A
235 240Right-handed alpha
Helix 13
13
A
265 270Right-handed alpha
Helix 14
14
A
270 276Right-handed alpha
Helix 15
15
A
343 347Right-handed 310
Helix 16
16
A
349 353Right-handed 310
Helix 17
17
A
375 380Right-handed alpha
Helix 18
18
B
15 33Right-handed alpha
Helix 19
19
B
45 47Right-handed 310
Helix 20
20
B
48 56Right-handed alpha
Helix 21
21
B
63 74Right-handed alpha
Helix 22
22
B
89 97Right-handed alpha
Helix 23
23
B
104 112Right-handed alpha
Helix 24
24
B
113 115Right-handed 310
Helix 25
25
B
148 153Right-handed 310
Helix 26
26
B
172 192Right-handed alpha
Helix 27
27
B
211 227Right-handed alpha
Helix 28
28
B
235 240Right-handed alpha
Helix 29
29
B
265 270Right-handed alpha
Helix 30
30
B
270 276Right-handed alpha
Helix 31
31
B
343 347Right-handed 310
Helix 32
32
B
349 353Right-handed 310
Helix 33
33
B
375 380Right-handed alpha
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There are 6 sheets in PDB entry 3N29. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 289first strand
Strand 2
A
318 324anti-parallel
Strand 3
A
304 309anti-parallel
Strand 4
A
258 262parallel
Strand 5
A
243 254anti-parallel
Strand 6
A
333 336anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 289first strand
Strand 2
A
318 324anti-parallel
Strand 3
A
304 309anti-parallel
Strand 4
A
258 262parallel
Strand 5
A
243 254anti-parallel
Strand 6
A
10 14anti-parallel
Strand 7
A
357 361parallel
Strand 8
A
367 371anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
58 61parallel
Strand 3
A
77 82parallel
Strand 4
A
99 102parallel
Strand 5
A
119 123parallel
Strand 6
A
162 164parallel
Strand 7
A
196 198parallel
Strand 8
A
229 232parallel
Strand 9
A
35 39parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 289first strand
Strand 2
B
318 324anti-parallel
Strand 3
B
304 309anti-parallel
Strand 4
B
258 262parallel
Strand 5
B
243 254anti-parallel
Strand 6
B
333 336anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 289first strand
Strand 2
B
318 324anti-parallel
Strand 3
B
304 309anti-parallel
Strand 4
B
258 262parallel
Strand 5
B
243 254anti-parallel
Strand 6
B
10 14anti-parallel
Strand 7
B
357 361parallel
Strand 8
B
367 371anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 39first strand
Strand 2
B
58 61parallel
Strand 3
B
77 82parallel
Strand 4
B
99 102parallel
Strand 5
B
119 123parallel
Strand 6
B
160 164parallel
Strand 7
B
196 198parallel
Strand 8
B
229 232parallel
Strand 9
B
35 39parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il