Analysis of interatomic Contacts of Structural Units in PDB entry:
3N39


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3N39 entry

There are 4 chains in PDB entry 3N39 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ILE 6SER 287
C
 GLN 3GLN 130
A
 SER 7PRO 288
D
 GLN 3GLN 130
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 3N39. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
16 29Right-handed alpha
Helix 2
2
B
32 36Right-handed 310
Helix 3
3
B
37 40Right-handed 310
Helix 4
4
B
41 47Right-handed alpha
Helix 5
5
B
49 73Right-handed alpha
Helix 6
6
B
73 79Right-handed alpha
Helix 7
7
B
80 82Right-handed 310
Helix 8
8
B
84 113Right-handed alpha
Helix 9
9
B
114 128Right-handed alpha
Helix 10
10
B
128 143Right-handed alpha
Helix 11
11
B
146 160Right-handed alpha
Helix 12
12
B
162 175Right-handed alpha
Helix 13
13
B
178 208Right-handed alpha
Helix 14
14
B
211 241Right-handed alpha
Helix 15
15
B
242 244Right-handed 310
Helix 16
16
B
246 266Right-handed alpha
Helix 17
17
B
279 287Right-handed alpha
Helix 18
18
C
12 20Right-handed alpha
Helix 19
19
C
59 67Right-handed alpha
Helix 20
20
C
68 74Right-handed alpha
Helix 21
21
C
83 90Right-handed 310
Helix 22
22
C
91 102Right-handed alpha
Helix 23
23
C
114 129Right-handed alpha
Helix 24
24
A
16 29Right-handed alpha
Helix 25
25
A
32 36Right-handed 310
Helix 26
26
A
37 40Right-handed 310
Helix 27
27
A
41 46Right-handed alpha
Helix 28
28
A
49 73Right-handed alpha
Helix 29
29
A
74 78Right-handed 310
Helix 30
30
A
84 113Right-handed alpha
Helix 31
31
A
114 128Right-handed alpha
Helix 32
32
A
128 143Right-handed alpha
Helix 33
33
A
146 160Right-handed alpha
Helix 34
34
A
162 175Right-handed alpha
Helix 35
35
A
178 207Right-handed alpha
Helix 36
36
A
211 241Right-handed alpha
Helix 37
37
A
246 265Right-handed alpha
Helix 38
38
A
279 287Right-handed alpha
Helix 39
39
D
12 22Right-handed alpha
Helix 40
40
D
59 67Right-handed alpha
Helix 41
41
D
68 74Right-handed alpha
Helix 42
42
D
83 90Right-handed 310
Helix 43
43
D
91 102Right-handed alpha
Helix 44
44
D
114 130Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3N39. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 27first strand
Strand 2
C
4 6parallel
Strand 3
C
42 47parallel
Strand 4
C
75 82parallel
Strand 5
C
105 110parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
25 28first strand
Strand 2
D
4 7parallel
Strand 3
D
42 47parallel
Strand 4
D
75 82parallel
Strand 5
D
105 110parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il