Analysis of interatomic Contacts of Structural Units in PDB entry:
3N4R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3N4R entry

There are 4 chains in PDB entry 3N4R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 70ASN 180
B
 ASN 70ASN 180
C
 ALA 68LEU 179
D
 SER 66ASN 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3N4R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
70 83Right-handed alpha
Helix 2
2
A
142 153Right-handed alpha
Helix 3
3
A
154 159Right-handed 310
Helix 4
4
A
164 166Right-handed 310
Helix 5
5
A
167 177Right-handed alpha
Helix 6
6
B
70 83Right-handed alpha
Helix 7
7
B
142 151Right-handed alpha
Helix 8
8
B
154 159Right-handed 310
Helix 9
9
B
164 166Right-handed 310
Helix 10
10
B
167 179Right-handed alpha
Helix 11
11
C
68 83Right-handed alpha
Helix 12
12
C
142 153Right-handed alpha
Helix 13
13
C
154 159Right-handed 310
Helix 14
14
C
167 179Right-handed alpha
Helix 15
15
D
66 83Right-handed alpha
Helix 16
16
D
142 153Right-handed alpha
Helix 17
17
D
154 159Right-handed 310
Helix 18
18
D
167 180Right-handed alpha
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There are 4 sheets in PDB entry 3N4R. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
96 102anti-parallel
Strand 3
A
116 122anti-parallel
Strand 4
A
132 136anti-parallel
Strand 5
A
161 163anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 92first strand
Strand 2
B
95 102anti-parallel
Strand 3
B
116 122anti-parallel
Strand 4
B
132 137anti-parallel
Strand 5
B
161 163anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 91first strand
Strand 2
C
95 103anti-parallel
Strand 3
C
115 123anti-parallel
Strand 4
C
131 136anti-parallel
Strand 5
C
161 164anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
84 86first strand
Strand 2
D
97 102anti-parallel
Strand 3
D
116 121anti-parallel
Strand 4
D
131 136anti-parallel
Strand 5
D
161 164anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il