Analysis of interatomic Contacts of Structural Units in PDB entry:
3N5F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3N5F entry

There are 2 chains in PDB entry 3N5F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3GLY 408
B
 GLN 3GLY 408
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3N5F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 16Right-handed alpha
Helix 2
2
A
31 49Right-handed alpha
Helix 3
3
A
91 108Right-handed alpha
Helix 4
4
A
133 141Right-handed alpha
Helix 5
5
A
144 149Right-handed 310
Helix 6
6
A
157 165Right-handed alpha
Helix 7
7
A
168 176Right-handed 310
Helix 8
8
A
194 200Right-handed alpha
Helix 9
9
A
236 256Right-handed alpha
Helix 10
10
A
289 312Right-handed alpha
Helix 11
11
A
329 344Right-handed alpha
Helix 12
12
A
374 378Right-handed 310
Helix 13
13
A
387 406Right-handed alpha
Helix 14
14
B
4 15Right-handed alpha
Helix 15
15
B
31 48Right-handed alpha
Helix 16
16
B
91 108Right-handed alpha
Helix 17
17
B
133 141Right-handed alpha
Helix 18
18
B
144 150Right-handed 310
Helix 19
19
B
157 165Right-handed alpha
Helix 20
20
B
168 176Right-handed 310
Helix 21
21
B
194 200Right-handed alpha
Helix 22
22
B
230 234Right-handed 310
Helix 23
23
B
236 255Right-handed alpha
Helix 24
24
B
289 312Right-handed alpha
Helix 25
25
B
329 344Right-handed alpha
Helix 26
26
B
357 362Right-handed alpha
Helix 27
27
B
374 378Right-handed 310
Helix 28
28
B
387 406Right-handed alpha
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There are 8 sheets in PDB entry 3N5F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
60 64anti-parallel
Strand 3
A
116 121anti-parallel
Strand 4
A
73 79parallel
Strand 5
A
182 190parallel
Strand 6
A
367 372parallel
Strand 7
A
203 209anti-parallel
Strand 8
A
326 327anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
60 64anti-parallel
Strand 3
A
116 121anti-parallel
Strand 4
A
73 79parallel
Strand 5
A
182 190parallel
Strand 6
A
367 372parallel
Strand 7
A
203 209anti-parallel
Strand 8
A
349 352parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 268first strand
Strand 2
A
278 287anti-parallel
Strand 3
A
211 220anti-parallel
Strand 4
A
314 323anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
274 275anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
60 64anti-parallel
Strand 3
B
116 121anti-parallel
Strand 4
B
73 79parallel
Strand 5
B
182 190parallel
Strand 6
B
367 372parallel
Strand 7
B
203 209anti-parallel
Strand 8
B
326 327anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
60 64anti-parallel
Strand 3
B
116 121anti-parallel
Strand 4
B
73 79parallel
Strand 5
B
182 190parallel
Strand 6
B
367 372parallel
Strand 7
B
203 209anti-parallel
Strand 8
B
349 352parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 268first strand
Strand 2
B
278 287anti-parallel
Strand 3
B
211 220anti-parallel
Strand 4
B
314 323anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 225first strand
Strand 2
B
274 275anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il