Analysis of interatomic Contacts of Structural Units in PDB entry:
3N5M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3N5M entry

There are 4 chains in PDB entry 3N5M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -2	ILE 449
B	ALA 0	ILE 449
C	SER -2	ILE 449
D	ASN -1	ILE 449

There are 76 helices in PDB entry 3N5M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	-2	17	Right-handed alpha
Helix 2	2	A	25	29	Right-handed 310
Helix 3	3	A	52	57	Right-handed alpha
Helix 4	4	A	64	76	Right-handed alpha
Helix 5	5	A	88	102	Right-handed alpha
Helix 6	6	A	112	130	Right-handed alpha
Helix 7	7	A	150	156	Right-handed alpha
Helix 8	8	A	159	163	Right-handed 310
Helix 9	9	A	191	194	Right-handed 310
Helix 10	10	A	195	209	Right-handed alpha
Helix 11	11	A	233	246	Right-handed alpha
Helix 12	12	A	265	270	Right-handed 310
Helix 13	13	A	280	285	Right-handed 310
Helix 14	14	A	297	301	Right-handed alpha
Helix 15	15	A	302	304	Right-handed 310
Helix 16	16	A	321	338	Right-handed alpha
Helix 17	17	A	339	360	Right-handed alpha
Helix 18	18	A	390	404	Right-handed alpha
Helix 19	19	A	431	447	Right-handed alpha
Helix 20	20	B	2	17	Right-handed alpha
Helix 21	21	B	25	29	Right-handed 310
Helix 22	22	B	52	57	Right-handed alpha
Helix 23	23	B	64	76	Right-handed alpha
Helix 24	24	B	88	102	Right-handed alpha
Helix 25	25	B	112	130	Right-handed alpha
Helix 26	26	B	150	156	Right-handed alpha
Helix 27	27	B	159	163	Right-handed 310
Helix 28	28	B	191	194	Right-handed 310
Helix 29	29	B	195	209	Right-handed alpha
Helix 30	30	B	233	246	Right-handed alpha
Helix 31	31	B	265	270	Right-handed 310
Helix 32	32	B	280	284	Right-handed 310
Helix 33	33	B	297	301	Right-handed alpha
Helix 34	34	B	302	304	Right-handed 310
Helix 35	35	B	321	338	Right-handed alpha
Helix 36	36	B	339	360	Right-handed alpha
Helix 37	37	B	390	404	Right-handed alpha
Helix 38	38	B	431	447	Right-handed alpha
Helix 39	39	C	0	17	Right-handed alpha
Helix 40	40	C	25	29	Right-handed 310
Helix 41	41	C	52	57	Right-handed alpha
Helix 42	42	C	64	76	Right-handed alpha
Helix 43	43	C	88	102	Right-handed alpha
Helix 44	44	C	112	130	Right-handed alpha
Helix 45	45	C	150	156	Right-handed alpha
Helix 46	46	C	159	163	Right-handed 310
Helix 47	47	C	191	194	Right-handed 310
Helix 48	48	C	195	209	Right-handed alpha
Helix 49	49	C	233	246	Right-handed alpha
Helix 50	50	C	265	270	Right-handed 310
Helix 51	51	C	280	285	Right-handed 310
Helix 52	52	C	297	301	Right-handed alpha
Helix 53	53	C	302	304	Right-handed 310
Helix 54	54	C	321	338	Right-handed alpha
Helix 55	55	C	339	360	Right-handed alpha
Helix 56	56	C	390	404	Right-handed alpha
Helix 57	57	C	431	447	Right-handed alpha
Helix 58	58	D	5	17	Right-handed alpha
Helix 59	59	D	25	29	Right-handed 310
Helix 60	60	D	52	57	Right-handed alpha
Helix 61	61	D	64	76	Right-handed alpha
Helix 62	62	D	88	102	Right-handed alpha
Helix 63	63	D	112	130	Right-handed alpha
Helix 64	64	D	150	156	Right-handed alpha
Helix 65	65	D	159	163	Right-handed 310
Helix 66	66	D	191	194	Right-handed 310
Helix 67	67	D	195	209	Right-handed alpha
Helix 68	68	D	233	246	Right-handed alpha
Helix 69	69	D	265	270	Right-handed 310
Helix 70	70	D	280	285	Right-handed 310
Helix 71	71	D	297	301	Right-handed alpha
Helix 72	72	D	302	304	Right-handed 310
Helix 73	73	D	321	338	Right-handed alpha
Helix 74	74	D	339	360	Right-handed alpha
Helix 75	75	D	390	404	Right-handed alpha
Helix 76	76	D	431	447	Right-handed alpha

There are 16 sheets in PDB entry 3N5M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	407	first strand
Strand 2	A	47	50	parallel
Strand 3	A	39	42	anti-parallel
Strand 4	A	31	36	anti-parallel
Strand 5	D	86	87	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	D	31	36	parallel
Strand 3	D	39	42	anti-parallel
Strand 4	D	47	50	anti-parallel
Strand 5	D	406	407	parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	110	first strand
Strand 2	A	291	296	anti-parallel
Strand 3	A	276	279	anti-parallel
Strand 4	A	248	252	parallel
Strand 5	A	213	218	parallel
Strand 6	A	138	142	parallel
Strand 7	A	173	176	parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	370	first strand
Strand 2	A	375	382	anti-parallel
Strand 3	A	387	388	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	370	first strand
Strand 2	A	375	382	anti-parallel
Strand 3	A	421	424	anti-parallel
Strand 4	A	409	410	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	407	first strand
Strand 2	B	47	50	parallel
Strand 3	B	39	42	anti-parallel
Strand 4	B	31	36	anti-parallel
Strand 5	C	86	87	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	C	31	36	parallel
Strand 3	C	39	42	anti-parallel
Strand 4	C	47	50	anti-parallel
Strand 5	C	406	407	parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	110	first strand
Strand 2	B	291	296	anti-parallel
Strand 3	B	276	279	anti-parallel
Strand 4	B	248	252	parallel
Strand 5	B	213	218	parallel
Strand 6	B	138	142	parallel
Strand 7	B	173	176	parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	370	first strand
Strand 2	B	375	382	anti-parallel
Strand 3	B	387	388	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	370	first strand
Strand 2	B	375	382	anti-parallel
Strand 3	B	421	424	anti-parallel
Strand 4	B	409	410	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	110	first strand
Strand 2	C	291	296	anti-parallel
Strand 3	C	276	279	anti-parallel
Strand 4	C	248	252	parallel
Strand 5	C	213	218	parallel
Strand 6	C	138	142	parallel
Strand 7	C	173	176	parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	370	first strand
Strand 2	C	375	382	anti-parallel
Strand 3	C	387	388	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	370	first strand
Strand 2	C	375	382	anti-parallel
Strand 3	C	421	424	anti-parallel
Strand 4	C	409	410	anti-parallel

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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	110	first strand
Strand 2	D	291	296	anti-parallel
Strand 3	D	276	279	anti-parallel
Strand 4	D	248	252	parallel
Strand 5	D	213	218	parallel
Strand 6	D	138	142	parallel
Strand 7	D	173	176	parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	365	370	first strand
Strand 2	D	375	382	anti-parallel
Strand 3	D	387	388	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	365	370	first strand
Strand 2	D	375	382	anti-parallel
Strand 3	D	421	424	anti-parallel
Strand 4	D	409	410	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3N5M

Analysis of interatomic Contacts of Structural Units in PDB entry:
3N5M