Analysis of interatomic Contacts of Structural Units in PDB entry:
3N6T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3N6T entry

There is 1 chain in PDB entry 3N6T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 92LEU 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3N6T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
99 105Right-handed alpha
Helix 2
2
A
105 118Right-handed alpha
Helix 3
3
A
133 139Right-handed alpha
Helix 4
4
A
150 154Right-handed 310
Helix 5
5
A
183 188Right-handed 310
Helix 6
6
A
202 212Right-handed alpha
Helix 7
7
A
228 235Right-handed alpha
Helix 8
8
A
244 249Right-handed alpha
Helix 9
9
A
252 254Right-handed 310
Helix 10
10
A
281 295Right-handed alpha
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There are 3 sheets in PDB entry 3N6T. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 127first strand
Strand 2
A
93 98parallel
Strand 3
A
144 149parallel
Strand 4
A
269 275anti-parallel
Strand 5
A
158 165anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 243first strand
Strand 2
A
168 173anti-parallel
Strand 3
A
256 258anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 195first strand
Strand 2
A
218 223parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il