Analysis of interatomic Contacts of Structural Units in PDB entry:
3N6X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3N6X entry

There is 1 chain in PDB entry 3N6X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6LYS 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3N6X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 22Right-handed 310
Helix 2
2
A
23 33Right-handed alpha
Helix 3
3
A
40 53Right-handed alpha
Helix 4
4
A
79 105Right-handed alpha
Helix 5
5
A
108 113Right-handed alpha
Helix 6
6
A
117 123Right-handed 310
Helix 7
7
A
127 131Right-handed 310
Helix 8
8
A
135 139Right-handed 310
Helix 9
9
A
168 183Right-handed alpha
Helix 10
10
A
183 190Right-handed alpha
Helix 11
11
A
197 209Right-handed alpha
Helix 12
12
A
230 242Right-handed alpha
Helix 13
13
A
247 249Right-handed 310
Helix 14
14
A
277 281Right-handed 310
Helix 15
15
A
296 303Right-handed alpha
Helix 16
16
A
314 319Right-handed alpha
Helix 17
17
A
322 324Right-handed 310
Helix 18
18
A
325 335Right-handed alpha
Helix 19
19
A
350 360Right-handed alpha
Helix 20
20
A
381 383Right-handed 310
Helix 21
21
A
384 398Right-handed alpha
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There are 6 sheets in PDB entry 3N6X. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
468 470parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 342first strand
Strand 2
A
156 162parallel
Strand 3
A
143 150anti-parallel
Strand 4
A
431 434anti-parallel
Strand 5
A
438 440anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 246first strand
Strand 2
A
219 222parallel
Strand 3
A
271 274parallel
Strand 4
A
307 309parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 253first strand
Strand 2
A
258 260anti-parallel
Strand 3
A
267 269anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 347first strand
Strand 2
A
402 406anti-parallel
Strand 3
A
364 368anti-parallel
Strand 4
A
377 379anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 417first strand
Strand 2
A
420 429anti-parallel
Strand 3
A
445 449anti-parallel
Strand 4
A
463 466anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il