Analysis of interatomic Contacts of Structural Units in PDB entry:
3N8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3N8F entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 3N8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1PRO 197
A
 LEU 199ASN 595
B
 SER 1PRO 197
B
 LEU 199ASN 595
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 3N8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
74 83Right-handed alpha
Helix 2
2
A
98 112Right-handed alpha
Helix 3
3
A
124 131Right-handed alpha
Helix 4
4
A
149 154Right-handed alpha
Helix 5
5
A
189 194Right-handed alpha
Helix 6
6
A
196 201Right-handed alpha
Helix 7
7
A
235 240Right-handed alpha
Helix 8
8
A
253 258Right-handed 310
Helix 9
9
A
259 284Right-handed alpha
Helix 10
10
A
288 311Right-handed alpha
Helix 11
11
A
312 318Right-handed alpha
Helix 12
12
A
320 325Right-handed alpha
Helix 13
13
A
342 347Right-handed alpha
Helix 14
14
A
348 353Right-handed 310
Helix 15
15
A
377 379Right-handed 310
Helix 16
16
A
383 388Right-handed alpha
Helix 17
17
A
392 402Right-handed alpha
Helix 18
18
A
414 419Right-handed alpha
Helix 19
19
A
432 445Right-handed alpha
Helix 20
20
A
448 456Right-handed alpha
Helix 21
21
A
463 472Right-handed alpha
Helix 22
22
A
473 484Right-handed alpha
Helix 23
23
A
486 490Right-handed 310
Helix 24
24
A
491 498Right-handed alpha
Helix 25
25
A
508 525Right-handed alpha
Helix 26
26
A
537 545Right-handed alpha
Helix 27
27
A
548 555Right-handed alpha
Helix 28
28
A
580 582Right-handed 310
Helix 29
29
A
587 591Right-handed 310
Helix 30
30
B
74 82Right-handed alpha
Helix 31
31
B
98 112Right-handed alpha
Helix 32
32
B
124 131Right-handed alpha
Helix 33
33
B
189 194Right-handed alpha
Helix 34
34
B
198 203Right-handed alpha
Helix 35
35
B
235 240Right-handed alpha
Helix 36
36
B
253 258Right-handed 310
Helix 37
37
B
259 284Right-handed alpha
Helix 38
38
B
288 311Right-handed alpha
Helix 39
39
B
313 318Right-handed alpha
Helix 40
40
B
320 325Right-handed alpha
Helix 41
41
B
342 347Right-handed alpha
Helix 42
42
B
348 353Right-handed 310
Helix 43
43
B
377 380Right-handed 310
Helix 44
44
B
383 388Right-handed alpha
Helix 45
45
B
392 402Right-handed alpha
Helix 46
46
B
414 419Right-handed alpha
Helix 47
47
B
432 444Right-handed alpha
Helix 48
48
B
448 456Right-handed alpha
Helix 49
49
B
463 472Right-handed alpha
Helix 50
50
B
473 485Right-handed alpha
Helix 51
51
B
486 490Right-handed 310
Helix 52
52
B
491 498Right-handed alpha
Helix 53
53
B
508 525Right-handed alpha
Helix 54
54
B
537 545Right-handed alpha
Helix 55
55
B
548 553Right-handed alpha
Helix 56
56
B
578 582Right-handed 310
Helix 57
57
B
587 591Right-handed 310
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There are 13 sheets in PDB entry 3N8F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
180 181anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 97first strand
Strand 2
A
403 405anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
157 158anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
212 213anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 358first strand
Strand 2
A
374 375anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 422first strand
Strand 2
A
429 431anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 563first strand
Strand 2
A
576 578anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 42first strand
Strand 2
B
180 181anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 97first strand
Strand 2
B
403 405anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 143first strand
Strand 2
B
157 158anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 205first strand
Strand 2
B
212 213anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 358first strand
Strand 2
B
374 375anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
421 422first strand
Strand 2
B
429 431anti-parallel
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