Analysis of interatomic Contacts of Structural Units in PDB entry:
3N8T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3N8T entry

There is 1 chain in PDB entry 3N8T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 550
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3N8T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 36Right-handed alpha
Helix 2
2
A
36 50Right-handed alpha
Helix 3
3
A
61 69Right-handed alpha
Helix 4
4
A
70 95Right-handed alpha
Helix 5
5
A
98 119Right-handed alpha
Helix 6
6
A
122 133Right-handed alpha
Helix 7
7
A
147 151Right-handed 310
Helix 8
8
A
153 173Right-handed alpha
Helix 9
9
A
181 185Right-handed 310
Helix 10
10
A
204 212Right-handed alpha
Helix 11
11
A
221 226Right-handed alpha
Helix 12
12
A
262 271Right-handed alpha
Helix 13
13
A
275 279Right-handed 310
Helix 14
14
A
313 344Right-handed alpha
Helix 15
15
A
356 358Right-handed 310
Helix 16
16
A
364 379Right-handed alpha
Helix 17
17
A
385 392Right-handed alpha
Helix 18
18
A
408 412Right-handed 310
Helix 19
19
A
423 443Right-handed alpha
Helix 20
20
A
446 465Right-handed alpha
Helix 21
21
A
465 474Right-handed alpha
Helix 22
22
A
477 506Right-handed alpha
Helix 23
23
A
509 520Right-handed alpha
Helix 24
24
A
528 532Right-handed 310
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There are 3 sheets in PDB entry 3N8T. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
136 141parallel
Strand 3
A
56 60parallel
Strand 4
A
4 11parallel
Strand 5
A
348 354parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
199 202anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 219first strand
Strand 2
A
257 260parallel
Strand 3
A
249 251anti-parallel
Strand 4
A
399 400parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il