Analysis of interatomic Contacts of Structural Units in PDB entry:
3NAW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NAW entry

There are 2 chains in PDB entry 3NAW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 176ARG 782
B
 ARG 173ARG 782
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 3NAW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
177 191Right-handed alpha
Helix 2
2
A
197 202Right-handed alpha
Helix 3
3
A
349 354Right-handed 310
Helix 4
4
A
359 362Right-handed 310
Helix 5
5
A
363 370Right-handed alpha
Helix 6
6
A
372 374Right-handed 310
Helix 7
7
A
375 389Right-handed alpha
Helix 8
8
A
399 411Right-handed alpha
Helix 9
9
A
418 441Right-handed alpha
Helix 10
10
A
449 463Right-handed alpha
Helix 11
11
A
463 470Right-handed alpha
Helix 12
12
A
470 482Right-handed alpha
Helix 13
13
A
487 499Right-handed alpha
Helix 14
14
A
504 509Right-handed alpha
Helix 15
15
A
549 558Right-handed alpha
Helix 16
16
A
578 582Right-handed 310
Helix 17
17
A
583 592Right-handed alpha
Helix 18
18
A
595 605Right-handed alpha
Helix 19
19
A
606 616Right-handed alpha
Helix 20
20
A
618 629Right-handed alpha
Helix 21
21
A
640 652Right-handed alpha
Helix 22
22
A
661 670Right-handed alpha
Helix 23
23
A
671 677Right-handed alpha
Helix 24
24
A
678 697Right-handed alpha
Helix 25
25
A
709 727Right-handed alpha
Helix 26
26
A
728 732Right-handed 310
Helix 27
27
A
733 746Right-handed alpha
Helix 28
28
A
747 750Right-handed 310
Helix 29
29
A
753 769Right-handed alpha
Helix 30
30
A
769 777Right-handed alpha
Helix 31
31
A
778 782Right-handed 310
Helix 32
32
B
179 191Right-handed alpha
Helix 33
33
B
349 354Right-handed 310
Helix 34
34
B
359 362Right-handed 310
Helix 35
35
B
363 370Right-handed alpha
Helix 36
36
B
372 374Right-handed 310
Helix 37
37
B
375 388Right-handed alpha
Helix 38
38
B
399 411Right-handed alpha
Helix 39
39
B
418 440Right-handed alpha
Helix 40
40
B
449 463Right-handed alpha
Helix 41
41
B
465 470Right-handed alpha
Helix 42
42
B
470 482Right-handed alpha
Helix 43
43
B
487 500Right-handed alpha
Helix 44
44
B
504 509Right-handed alpha
Helix 45
45
B
549 558Right-handed alpha
Helix 46
46
B
583 591Right-handed alpha
Helix 47
47
B
595 603Right-handed alpha
Helix 48
48
B
606 616Right-handed alpha
Helix 49
49
B
618 629Right-handed alpha
Helix 50
50
B
640 652Right-handed alpha
Helix 51
51
B
661 670Right-handed alpha
Helix 52
52
B
678 697Right-handed alpha
Helix 53
53
B
709 727Right-handed alpha
Helix 54
54
B
728 732Right-handed 310
Helix 55
55
B
733 746Right-handed alpha
Helix 56
56
B
753 769Right-handed alpha
Helix 57
57
B
769 777Right-handed alpha
Helix 58
58
B
778 782Right-handed 310
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There are 8 sheets in PDB entry 3NAW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 252first strand
Strand 2
A
267 271parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
339 342parallel
Strand 3
A
333 336anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 537first strand
Strand 2
A
544 548anti-parallel
Strand 3
A
569 572anti-parallel
Strand 4
A
575 577anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
655 656first strand
Strand 2
A
659 660anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 252first strand
Strand 2
B
267 271parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 309first strand
Strand 2
B
339 342parallel
Strand 3
B
333 336anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
534 537first strand
Strand 2
B
544 548anti-parallel
Strand 3
B
569 572anti-parallel
Strand 4
B
575 576anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
655 656first strand
Strand 2
B
659 660anti-parallel
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