Analysis of interatomic Contacts of Structural Units in PDB entry:
3NBH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NBH entry

There are 2 chains in PDB entry 3NBH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 476LYS 625
B
 LEU 17PRO 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3NBH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
479 481Right-handed 310
Helix 2
2
A
482 488Right-handed alpha
Helix 3
3
A
493 500Right-handed alpha
Helix 4
4
A
523 527Right-handed 310
Helix 5
5
A
547 555Right-handed alpha
Helix 6
6
A
557 565Right-handed alpha
Helix 7
7
A
567 588Right-handed alpha
Helix 8
8
A
612 625Right-handed alpha
Helix 9
9
B
26 33Right-handed alpha
Helix 10
10
B
85 89Right-handed 310
Helix 11
11
B
129 145Right-handed alpha
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There are 3 sheets in PDB entry 3NBH. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 517first strand
Strand 2
A
529 535anti-parallel
Strand 3
A
540 546anti-parallel
Strand 4
A
603 609parallel
Strand 5
A
589 596anti-parallel
Strand 6
A
506 517anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
57 68parallel
Strand 3
B
101 110anti-parallel
Strand 4
B
116 124anti-parallel
Strand 5
B
79 84parallel
Strand 6
B
71 76anti-parallel
Strand 7
B
57 68anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 37first strand
Strand 2
B
40 43anti-parallel
Strand 3
B
53 55anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il