Analysis of interatomic Contacts of Structural Units in PDB entry:
3NBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NBJ entry

There are 18 chains in PDB entry 3NBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 18ASN 404
A
GLU 406LEU 633
A
PRO 635VAL 672
B
PRO 18ASN 404
B
GLU 406LEU 633
B
PRO 635VAL 672
C
PRO 18ASN 404
C
GLU 406LEU 633
C
PRO 635VAL 672
D
PRO 18ASN 404
D
GLU 406LEU 633
D
PRO 635VAL 672
E
PRO 18ASN 404
E
GLU 406LEU 633
E
PRO 635VAL 672
F
PRO 18ASN 404
F
GLU 406LEU 633
F
PRO 635VAL 672
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are102 helices in PDB entry 3NBJ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
29 44Right-handed alpha
Helix 2
2
A
60 70Right-handed alpha
Helix 3
3
A
117 123Right-handed alpha
Helix 4
4
A
123 130Right-handed alpha
Helix 5
5
A
131 141Right-handed alpha
Helix 6
6
A
144 149Right-handed 310
Helix 7
7
A
184 188Right-handed 310
Helix 8
8
A
224 232Right-handed alpha
Helix 9
9
A
311 314Right-handed 310
Helix 10
10
A
318 323Right-handed alpha
Helix 11
11
A
379 382Right-handed 310
Helix 12
12
A
507 512Right-handed alpha
Helix 13
13
A
557 563Right-handed alpha
Helix 14
14
A
564 568Right-handed 310
Helix 15
15
A
596 603Right-handed alpha
Helix 16
16
A
627 631Right-handed 310
Helix 17
17
A
664 671Right-handed alpha
Helix 18
18
B
29 44Right-handed alpha
Helix 19
19
B
60 70Right-handed alpha
Helix 20
20
B
117 123Right-handed alpha
Helix 21
21
B
123 130Right-handed alpha
Helix 22
22
B
131 141Right-handed alpha
Helix 23
23
B
144 149Right-handed 310
Helix 24
24
B
184 188Right-handed 310
Helix 25
25
B
224 232Right-handed alpha
Helix 26
26
B
311 314Right-handed 310
Helix 27
27
B
318 323Right-handed alpha
Helix 28
28
B
379 382Right-handed 310
Helix 29
29
B
507 512Right-handed alpha
Helix 30
30
B
557 563Right-handed alpha
Helix 31
31
B
564 568Right-handed 310
Helix 32
32
B
596 603Right-handed alpha
Helix 33
33
B
627 631Right-handed 310
Helix 34
34
B
664 671Right-handed alpha
Helix 35
35
C
29 44Right-handed alpha
Helix 36
36
C
60 70Right-handed alpha
Helix 37
37
C
117 123Right-handed alpha
Helix 38
38
C
123 130Right-handed alpha
Helix 39
39
C
131 141Right-handed alpha
Helix 40
40
C
144 149Right-handed 310
Helix 41
41
C
184 188Right-handed 310
Helix 42
42
C
224 232Right-handed alpha
Helix 43
43
C
311 314Right-handed 310
Helix 44
44
C
318 323Right-handed alpha
Helix 45
45
C
379 382Right-handed 310
Helix 46
46
C
507 512Right-handed alpha
Helix 47
47
C
557 563Right-handed alpha
Helix 48
48
C
564 568Right-handed 310
Helix 49
49
C
596 603Right-handed alpha
Helix 50
50
C
627 631Right-handed 310
Helix 51
51
C
664 671Right-handed alpha
Helix 52
52
D
29 44Right-handed alpha
Helix 53
53
D
60 70Right-handed alpha
Helix 54
54
D
117 123Right-handed alpha
Helix 55
55
D
123 130Right-handed alpha
Helix 56
56
D
131 141Right-handed alpha
Helix 57
57
D
144 149Right-handed 310
Helix 58
58
D
184 188Right-handed 310
Helix 59
59
D
224 232Right-handed alpha
Helix 60
60
D
311 314Right-handed 310
Helix 61
61
D
318 323Right-handed alpha
Helix 62
62
D
379 382Right-handed 310
Helix 63
63
D
507 512Right-handed alpha
Helix 64
64
D
557 563Right-handed alpha
Helix 65
65
D
564 568Right-handed 310
Helix 66
66
D
596 603Right-handed alpha
Helix 67
67
D
627 631Right-handed 310
Helix 68
68
D
664 671Right-handed alpha
Helix 69
69
E
29 44Right-handed alpha
Helix 70
70
E
60 70Right-handed alpha
Helix 71
71
E
117 123Right-handed alpha
Helix 72
72
E
123 130Right-handed alpha
Helix 73
73
E
131 141Right-handed alpha
Helix 74
74
E
144 149Right-handed 310
Helix 75
75
E
184 188Right-handed 310
Helix 76
76
E
224 232Right-handed alpha
Helix 77
77
E
311 314Right-handed 310
Helix 78
78
E
318 323Right-handed alpha
Helix 79
79
E
379 382Right-handed 310
Helix 80
80
E
507 512Right-handed alpha
Helix 81
81
E
557 563Right-handed alpha
Helix 82
82
E
564 568Right-handed 310
Helix 83
83
E
596 603Right-handed alpha
Helix 84
84
E
627 631Right-handed 310
Helix 85
85
E
664 671Right-handed alpha
Helix 86
86
F
29 44Right-handed alpha
Helix 87
87
F
60 70Right-handed alpha
Helix 88
88
F
117 123Right-handed alpha
Helix 89
89
F
123 130Right-handed alpha
Helix 90
90
F
131 141Right-handed alpha
Helix 91
91
F
144 149Right-handed 310
Helix 92
92
F
184 188Right-handed 310
Helix 93
93
F
224 232Right-handed alpha
Helix 94
94
F
311 314Right-handed 310
Helix 95
95
F
318 323Right-handed alpha
Helix 96
96
F
379 382Right-handed 310
Helix 97
97
F
507 512Right-handed alpha
Helix 98
98
F
557 563Right-handed alpha
Helix 99
99
F
564 568Right-handed 310
Helix 100
100
F
596 603Right-handed alpha
Helix 101
101
F
627 631Right-handed 310
Helix 102
102
F
664 671Right-handed alpha
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There are 45 sheets in PDB entry 3NBJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
49 57first strand
Strand 2
A
78 85anti-parallel
Strand 3
A
91 97anti-parallel
Strand 4
A
102 109anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
151 157first strand
Strand 2
A
170 177anti-parallel
Strand 3
A
193 197anti-parallel
Strand 4
A
202 207anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
243 245first strand
Strand 2
B
243 245anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
253 255first strand
Strand 2
A
258 261anti-parallel
Strand 3
A
264 271anti-parallel
Strand 4
A
275 285anti-parallel
Strand 5
A
288 304anti-parallel
Strand 6
A
316 317anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
253 255first strand
Strand 2
A
258 261anti-parallel
Strand 3
A
264 271anti-parallel
Strand 4
A
275 285anti-parallel
Strand 5
A
288 304anti-parallel
Strand 6
A
456 466anti-parallel
Strand 7
A
614 624anti-parallel
Strand 8
A
570 574anti-parallel
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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
343 350first strand
Strand 2
A
356 377anti-parallel
Strand 3
A
386 402anti-parallel
Strand 4
A
405 414anti-parallel
Strand 5
A
419 427anti-parallel
Strand 6
A
634 646anti-parallel
Strand 7
A
540 544anti-parallel
Strand 8
A
522 526anti-parallel
Strand 9
A
474 482anti-parallel
Strand 10
A
498 504anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
343 350first strand
Strand 2
A
356 377anti-parallel
Strand 3
A
386 402anti-parallel
Strand 4
A
661 663anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
432 433first strand
Strand 2
A
451 454anti-parallel
Strand 3
A
444 448anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
49 57first strand
Strand 2
B
78 85anti-parallel
Strand 3
B
91 97anti-parallel
Strand 4
B
102 109anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
151 157first strand
Strand 2
B
170 177anti-parallel
Strand 3
B
193 197anti-parallel
Strand 4
B
202 207anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
253 255first strand
Strand 2
B
258 261anti-parallel
Strand 3
B
264 271anti-parallel
Strand 4
B
275 285anti-parallel
Strand 5
B
288 304anti-parallel
Strand 6
B
316 317anti-parallel
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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
253 255first strand
Strand 2
B
258 261anti-parallel
Strand 3
B
264 271anti-parallel
Strand 4
B
275 285anti-parallel
Strand 5
B
288 304anti-parallel
Strand 6
B
456 466anti-parallel
Strand 7
B
614 624anti-parallel
Strand 8
B
570 574anti-parallel
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There are 10 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
343 350first strand
Strand 2
B
356 377anti-parallel
Strand 3
B
386 402anti-parallel
Strand 4
B
405 414anti-parallel
Strand 5
B
419 427anti-parallel
Strand 6
B
634 646anti-parallel
Strand 7
B
540 544anti-parallel
Strand 8
B
522 526anti-parallel
Strand 9
B
474 482anti-parallel
Strand 10
B
498 504anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
343 350first strand
Strand 2
B
356 377anti-parallel
Strand 3
B
386 402anti-parallel
Strand 4
B
661 663anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
432 433first strand
Strand 2
B
451 454anti-parallel
Strand 3
B
444 448anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
49 57first strand
Strand 2
C
78 85anti-parallel
Strand 3
C
91 97anti-parallel
Strand 4
C
102 109anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
151 157first strand
Strand 2
C
170 177anti-parallel
Strand 3
C
193 197anti-parallel
Strand 4
C
202 207anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
243 245first strand
Strand 2
D
243 245anti-parallel
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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
253 255first strand
Strand 2
C
258 261anti-parallel
Strand 3
C
264 271anti-parallel
Strand 4
C
275 285anti-parallel
Strand 5
C
288 304anti-parallel
Strand 6
C
316 317anti-parallel
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There are 8 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
253 255first strand
Strand 2
C
258 261anti-parallel
Strand 3
C
264 271anti-parallel
Strand 4
C
275 285anti-parallel
Strand 5
C
288 304anti-parallel
Strand 6
C
456 466anti-parallel
Strand 7
C
614 624anti-parallel
Strand 8
C
570 574anti-parallel
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There are 10 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
343 350first strand
Strand 2
C
356 377anti-parallel
Strand 3
C
386 402anti-parallel
Strand 4
C
405 414anti-parallel
Strand 5
C
419 427anti-parallel
Strand 6
C
634 646anti-parallel
Strand 7
C
540 544anti-parallel
Strand 8
C
522 526anti-parallel
Strand 9
C
474 482anti-parallel
Strand 10
C
498 504anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
343 350first strand
Strand 2
C
356 377anti-parallel
Strand 3
C
386 402anti-parallel
Strand 4
C
661 663anti-parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
432 433first strand
Strand 2
C
451 454anti-parallel
Strand 3
C
444 448anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
49 57first strand
Strand 2
D
78 85anti-parallel
Strand 3
D
91 97anti-parallel
Strand 4
D
102 109anti-parallel
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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
151 157first strand
Strand 2
D
170 177anti-parallel
Strand 3
D
193 197anti-parallel
Strand 4
D
202 207anti-parallel
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There are 6 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
253 255first strand
Strand 2
D
258 261anti-parallel
Strand 3
D
264 271anti-parallel
Strand 4
D
275 285anti-parallel
Strand 5
D
288 304anti-parallel
Strand 6
D
316 317anti-parallel
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There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
253 255first strand
Strand 2
D
258 261anti-parallel
Strand 3
D
264 271anti-parallel
Strand 4
D
275 285anti-parallel
Strand 5
D
288 304anti-parallel
Strand 6
D
456 466anti-parallel
Strand 7
D
614 624anti-parallel
Strand 8
D
570 574anti-parallel
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There are 10 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
343 350first strand
Strand 2
D
356 377anti-parallel
Strand 3
D
386 402anti-parallel
Strand 4
D
405 414anti-parallel
Strand 5
D
419 427anti-parallel
Strand 6
D
634 646anti-parallel
Strand 7
D
540 544anti-parallel
Strand 8
D
522 526anti-parallel
Strand 9
D
474 482anti-parallel
Strand 10
D
498 504anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
343 350first strand
Strand 2
D
356 377anti-parallel
Strand 3
D
386 402anti-parallel
Strand 4
D
661 663anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
432 433first strand
Strand 2
D
451 454anti-parallel
Strand 3
D
444 448anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
49 57first strand
Strand 2
E
78 85anti-parallel
Strand 3
E
91 97anti-parallel
Strand 4
E
102 109anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
151 157first strand
Strand 2
E
170 177anti-parallel
Strand 3
E
193 197anti-parallel
Strand 4
E
202 207anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
243 245first strand
Strand 2
F
243 245anti-parallel
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There are 6 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
253 255first strand
Strand 2
E
258 261anti-parallel
Strand 3
E
264 271anti-parallel
Strand 4
E
275 285anti-parallel
Strand 5
E
288 304anti-parallel
Strand 6
E
316 317anti-parallel
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There are 8 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
253 255first strand
Strand 2
E
258 261anti-parallel
Strand 3
E
264 271anti-parallel
Strand 4
E
275 285anti-parallel
Strand 5
E
288 304anti-parallel
Strand 6
E
456 466anti-parallel
Strand 7
E
614 624anti-parallel
Strand 8
E
570 574anti-parallel
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There are 10 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
343 350first strand
Strand 2
E
356 377anti-parallel
Strand 3
E
386 402anti-parallel
Strand 4
E
405 414anti-parallel
Strand 5
E
419 427anti-parallel
Strand 6
E
634 646anti-parallel
Strand 7
E
540 544anti-parallel
Strand 8
E
522 526anti-parallel
Strand 9
E
474 482anti-parallel
Strand 10
E
498 504anti-parallel
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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
343 350first strand
Strand 2
E
356 377anti-parallel
Strand 3
E
386 402anti-parallel
Strand 4
E
661 663anti-parallel
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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
432 433first strand
Strand 2
E
451 454anti-parallel
Strand 3
E
444 448anti-parallel
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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
49 57first strand
Strand 2
F
78 85anti-parallel
Strand 3
F
91 97anti-parallel
Strand 4
F
102 109anti-parallel
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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
151 157first strand
Strand 2
F
170 177anti-parallel
Strand 3
F
193 197anti-parallel
Strand 4
F
202 207anti-parallel
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There are 6 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
253 255first strand
Strand 2
F
258 261anti-parallel
Strand 3
F
264 271anti-parallel
Strand 4
F
275 285anti-parallel
Strand 5
F
288 304anti-parallel
Strand 6
F
316 317anti-parallel
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There are 8 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
253 255first strand
Strand 2
F
258 261anti-parallel
Strand 3
F
264 271anti-parallel
Strand 4
F
275 285anti-parallel
Strand 5
F
288 304anti-parallel
Strand 6
F
456 466anti-parallel
Strand 7
F
614 624anti-parallel
Strand 8
F
570 574anti-parallel
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There are 10 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
343 350first strand
Strand 2
F
356 377anti-parallel
Strand 3
F
386 402anti-parallel
Strand 4
F
405 414anti-parallel
Strand 5
F
419 427anti-parallel
Strand 6
F
634 646anti-parallel
Strand 7
F
540 544anti-parallel
Strand 8
F
522 526anti-parallel
Strand 9
F
474 482anti-parallel
Strand 10
F
498 504anti-parallel
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There are 4 strands in AR sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
343 350first strand
Strand 2
F
356 377anti-parallel
Strand 3
F
386 402anti-parallel
Strand 4
F
661 663anti-parallel
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There are 3 strands in AS sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
432 433first strand
Strand 2
F
451 454anti-parallel
Strand 3
F
444 448anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il