Analysis of interatomic Contacts of Structural Units in PDB entry:
3NBY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NBY entry

There are 6 chains in PDB entry 3NBY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY -1ASN 359
C
 VAL 9MET 179
A
 ALA 12SER 1055
E
 GLY -1ASN 359
F
 VAL 9MET 179
D
 ALA 12SER 1055
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are147 helices in PDB entry 3NBY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
1 10Right-handed alpha
Helix 2
2
B
39 49Right-handed alpha
Helix 3
3
B
56 67Right-handed alpha
Helix 4
4
B
177 180Right-handed 310
Helix 5
5
B
199 211Right-handed alpha
Helix 6
6
B
237 245Right-handed alpha
Helix 7
7
B
279 283Right-handed 310
Helix 8
8
C
22 30Right-handed alpha
Helix 9
9
C
69 73Right-handed 310
Helix 10
10
C
76 81Right-handed alpha
Helix 11
11
C
95 100Right-handed alpha
Helix 12
12
C
100 110Right-handed alpha
Helix 13
13
C
132 137Right-handed 310
Helix 14
14
C
138 143Right-handed alpha
Helix 15
15
C
158 170Right-handed alpha
Helix 16
16
A
26 37Right-handed alpha
Helix 17
17
A
40 49Right-handed alpha
Helix 18
18
A
58 65Right-handed alpha
Helix 19
19
A
71 90Right-handed alpha
Helix 20
20
A
91 94Right-handed 310
Helix 21
21
A
95 114Right-handed alpha
Helix 22
22
A
123 142Right-handed alpha
Helix 23
23
A
148 160Right-handed alpha
Helix 24
24
A
161 180Right-handed alpha
Helix 25
25
A
181 186Right-handed alpha
Helix 26
26
A
187 201Right-handed alpha
Helix 27
27
A
202 216Right-handed alpha
Helix 28
28
A
218 231Right-handed alpha
Helix 29
29
A
238 243Right-handed alpha
Helix 30
30
A
245 254Right-handed alpha
Helix 31
31
A
260 272Right-handed alpha
Helix 32
32
A
279 297Right-handed alpha
Helix 33
33
A
303 310Right-handed alpha
Helix 34
34
A
312 333Right-handed alpha
Helix 35
35
A
343 358Right-handed alpha
Helix 36
36
A
364 384Right-handed alpha
Helix 37
37
A
405 408Right-handed 310
Helix 38
38
A
409 424Right-handed alpha
Helix 39
39
A
448 467Right-handed alpha
Helix 40
40
A
468 485Right-handed alpha
Helix 41
41
A
490 504Right-handed alpha
Helix 42
42
A
509 531Right-handed alpha
Helix 43
43
A
534 550Right-handed alpha
Helix 44
44
A
551 558Right-handed alpha
Helix 45
45
A
558 573Right-handed alpha
Helix 46
46
A
579 595Right-handed alpha
Helix 47
47
A
609 616Right-handed alpha
Helix 48
48
A
617 622Right-handed alpha
Helix 49
49
A
626 642Right-handed alpha
Helix 50
50
A
646 658Right-handed alpha
Helix 51
51
A
658 674Right-handed alpha
Helix 52
52
A
677 680Right-handed 310
Helix 53
53
A
681 703Right-handed alpha
Helix 54
54
A
706 734Right-handed alpha
Helix 55
55
A
735 741Right-handed 310
Helix 56
56
A
742 765Right-handed alpha
Helix 57
57
A
769 776Right-handed alpha
Helix 58
58
A
777 791Right-handed alpha
Helix 59
59
A
792 796Right-handed 310
Helix 60
60
A
797 810Right-handed alpha
Helix 61
61
A
811 816Right-handed 310
Helix 62
62
A
818 835Right-handed alpha
Helix 63
63
A
841 860Right-handed alpha
Helix 64
64
A
860 865Right-handed alpha
Helix 65
65
A
867 883Right-handed alpha
Helix 66
66
A
886 907Right-handed alpha
Helix 67
67
A
907 919Right-handed alpha
Helix 68
68
A
919 931Right-handed alpha
Helix 69
69
A
938 954Right-handed alpha
Helix 70
70
A
969 986Right-handed alpha
Helix 71
71
A
990 1004Right-handed alpha
Helix 72
72
A
1007 1024Right-handed alpha
Helix 73
73
A
1034 1042Right-handed alpha
Helix 74
74
A
1042 1053Right-handed alpha
Helix 75
75
E
1 9Right-handed alpha
Helix 76
76
E
39 50Right-handed alpha
Helix 77
77
E
56 67Right-handed alpha
Helix 78
78
E
177 179Right-handed 310
Helix 79
79
E
199 209Right-handed alpha
Helix 80
80
E
237 245Right-handed alpha
Helix 81
81
E
279 284Right-handed 310
Helix 82
82
F
22 31Right-handed alpha
Helix 83
83
F
76 81Right-handed alpha
Helix 84
84
F
95 100Right-handed alpha
Helix 85
85
F
100 110Right-handed alpha
Helix 86
86
F
132 137Right-handed 310
Helix 87
87
F
138 143Right-handed alpha
Helix 88
88
F
158 170Right-handed alpha
Helix 89
89
D
26 37Right-handed alpha
Helix 90
90
D
40 49Right-handed alpha
Helix 91
91
D
58 65Right-handed alpha
Helix 92
92
D
71 90Right-handed alpha
Helix 93
93
D
91 94Right-handed 310
Helix 94
94
D
95 114Right-handed alpha
Helix 95
95
D
123 146Right-handed alpha
Helix 96
96
D
148 160Right-handed alpha
Helix 97
97
D
161 180Right-handed alpha
Helix 98
98
D
181 186Right-handed alpha
Helix 99
99
D
187 201Right-handed alpha
Helix 100
100
D
202 216Right-handed alpha
Helix 101
101
D
218 231Right-handed alpha
Helix 102
102
D
238 243Right-handed alpha
Helix 103
103
D
245 254Right-handed alpha
Helix 104
104
D
260 272Right-handed alpha
Helix 105
105
D
279 297Right-handed alpha
Helix 106
106
D
303 310Right-handed alpha
Helix 107
107
D
312 333Right-handed alpha
Helix 108
108
D
343 358Right-handed alpha
Helix 109
109
D
364 384Right-handed alpha
Helix 110
110
D
405 408Right-handed 310
Helix 111
111
D
409 424Right-handed alpha
Helix 112
112
D
448 467Right-handed alpha
Helix 113
113
D
468 485Right-handed alpha
Helix 114
114
D
490 504Right-handed alpha
Helix 115
115
D
509 531Right-handed alpha
Helix 116
116
D
534 550Right-handed alpha
Helix 117
117
D
551 558Right-handed alpha
Helix 118
118
D
558 573Right-handed alpha
Helix 119
119
D
579 595Right-handed alpha
Helix 120
120
D
609 616Right-handed alpha
Helix 121
121
D
617 622Right-handed alpha
Helix 122
122
D
626 642Right-handed alpha
Helix 123
123
D
646 658Right-handed alpha
Helix 124
124
D
658 671Right-handed alpha
Helix 125
125
D
677 680Right-handed 310
Helix 126
126
D
681 703Right-handed alpha
Helix 127
127
D
706 734Right-handed alpha
Helix 128
128
D
735 741Right-handed 310
Helix 129
129
D
742 764Right-handed alpha
Helix 130
130
D
769 776Right-handed alpha
Helix 131
131
D
777 784Right-handed alpha
Helix 132
132
D
784 791Right-handed alpha
Helix 133
133
D
792 796Right-handed 310
Helix 134
134
D
797 810Right-handed alpha
Helix 135
135
D
811 816Right-handed 310
Helix 136
136
D
818 835Right-handed alpha
Helix 137
137
D
841 860Right-handed alpha
Helix 138
138
D
860 865Right-handed alpha
Helix 139
139
D
867 883Right-handed alpha
Helix 140
140
D
886 907Right-handed alpha
Helix 141
141
D
907 919Right-handed alpha
Helix 142
142
D
919 931Right-handed alpha
Helix 143
143
D
938 954Right-handed alpha
Helix 144
144
D
969 986Right-handed alpha
Helix 145
145
D
990 1004Right-handed alpha
Helix 146
146
D
1007 1024Right-handed alpha
Helix 147
147
D
1034 1053Right-handed alpha
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There are 9 sheets in PDB entry 3NBY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 106first strand
Strand 2
B
268 276parallel
Strand 3
B
253 260anti-parallel
Strand 4
B
118 124anti-parallel
Strand 5
B
233 235anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 151first strand
Strand 2
B
138 141anti-parallel
Strand 3
B
127 133anti-parallel
Strand 4
B
169 176anti-parallel
Strand 5
B
181 189anti-parallel
Strand 6
B
228 230parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
145 148first strand
Strand 2
C
117 122parallel
Strand 3
C
86 91parallel
Strand 4
C
10 17parallel
Strand 5
C
57 65parallel
Strand 6
C
47 54anti-parallel
Strand 7
C
176 177anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 433first strand
Strand 2
A
441 444anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
102 106first strand
Strand 2
E
268 276parallel
Strand 3
E
253 260anti-parallel
Strand 4
E
118 124anti-parallel
Strand 5
E
233 235anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
147 151first strand
Strand 2
E
137 141anti-parallel
Strand 3
E
127 134anti-parallel
Strand 4
E
169 176anti-parallel
Strand 5
E
181 190anti-parallel
Strand 6
E
193 194anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
147 151first strand
Strand 2
E
137 141anti-parallel
Strand 3
E
127 134anti-parallel
Strand 4
E
169 176anti-parallel
Strand 5
E
181 190anti-parallel
Strand 6
E
227 230parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
145 148first strand
Strand 2
F
117 122parallel
Strand 3
F
86 91parallel
Strand 4
F
10 17parallel
Strand 5
F
57 65parallel
Strand 6
F
47 54anti-parallel
Strand 7
F
176 177anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
430 432first strand
Strand 2
D
442 444anti-parallel
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