Analysis of interatomic Contacts of Structural Units in PDB entry:
3NCV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NCV entry

There are 2 chains in PDB entry 3NCV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 463PHE 654
B
 LEU 464ARG 656
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3NCV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
492 512Right-handed alpha
Helix 2
2
A
528 545Right-handed alpha
Helix 3
3
A
570 583Right-handed alpha
Helix 4
4
A
594 603Right-handed alpha
Helix 5
5
A
615 628Right-handed alpha
Helix 6
6
A
647 653Right-handed alpha
Helix 7
7
B
492 511Right-handed alpha
Helix 8
8
B
528 545Right-handed alpha
Helix 9
9
B
565 567Right-handed 310
Helix 10
10
B
570 584Right-handed alpha
Helix 11
11
B
594 604Right-handed alpha
Helix 12
12
B
615 628Right-handed alpha
Helix 13
13
B
647 653Right-handed alpha
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There are 4 sheets in PDB entry 3NCV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 474first strand
Strand 2
A
478 483anti-parallel
Strand 3
A
486 491anti-parallel
Strand 4
A
642 646anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
516 526first strand
Strand 2
A
556 563anti-parallel
Strand 3
A
548 550anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
469 473first strand
Strand 2
B
478 483anti-parallel
Strand 3
B
486 491anti-parallel
Strand 4
B
642 646anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
516 526first strand
Strand 2
B
556 563anti-parallel
Strand 3
B
548 551anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il