Analysis of interatomic Contacts of Structural Units in PDB entry:
3NDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NDC entry

There are 2 chains in PDB entry 3NDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2PHE 233
B
 MET 1SER 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3NDC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
17 27Right-handed alpha
Helix 3
3
A
38 45Right-handed 310
Helix 4
4
A
58 73Right-handed alpha
Helix 5
5
A
89 100Right-handed alpha
Helix 6
6
A
111 121Right-handed alpha
Helix 7
7
A
150 156Right-handed alpha
Helix 8
8
A
166 168Right-handed 310
Helix 9
9
A
169 182Right-handed alpha
Helix 10
10
A
206 208Right-handed 310
Helix 11
11
A
209 213Right-handed 310
Helix 12
12
A
226 229Right-handed 310
Helix 13
13
B
12 16Right-handed 310
Helix 14
14
B
17 26Right-handed alpha
Helix 15
15
B
38 43Right-handed alpha
Helix 16
16
B
58 72Right-handed alpha
Helix 17
17
B
89 99Right-handed alpha
Helix 18
18
B
111 120Right-handed alpha
Helix 19
19
B
150 156Right-handed alpha
Helix 20
20
B
166 168Right-handed 310
Helix 21
21
B
169 182Right-handed alpha
Helix 22
22
B
226 230Right-handed 310
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There are 3 sheets in PDB entry 3NDC. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
29 32parallel
Strand 3
A
76 80parallel
Strand 4
A
3 7parallel
Strand 5
A
104 107parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 204first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
220 224anti-parallel
Strand 4
A
160 164anti-parallel
Strand 5
A
133 137parallel
Strand 6
B
133 137anti-parallel
Strand 7
B
160 164parallel
Strand 8
B
220 224anti-parallel
Strand 9
B
186 191anti-parallel
Strand 10
B
199 204anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
29 32parallel
Strand 3
B
76 80parallel
Strand 4
B
3 7parallel
Strand 5
B
104 107parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il