Analysis of interatomic Contacts of Structural Units in PDB entry:
3NDI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NDI entry

There is 1 chain in PDB entry 3NDI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 10ARG 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3NDI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
67 72Right-handed alpha
Helix 2
2
A
79 82Right-handed 310
Helix 3
3
A
83 100Right-handed alpha
Helix 4
4
A
119 126Right-handed alpha
Helix 5
5
A
136 146Right-handed alpha
Helix 6
6
A
156 168Right-handed alpha
Helix 7
7
A
178 182Right-handed 310
Helix 8
8
A
184 195Right-handed alpha
Helix 9
9
A
208 216Right-handed alpha
Helix 10
10
A
217 221Right-handed 310
Helix 11
11
A
230 241Right-handed alpha
Helix 12
12
A
252 255Right-handed 310
Helix 13
13
A
271 284Right-handed alpha
Helix 14
14
A
288 316Right-handed alpha
Helix 15
15
A
327 337Right-handed alpha
Helix 16
16
A
350 354Right-handed 310
Helix 17
17
A
369 371Right-handed 310
Helix 18
18
A
383 385Right-handed 310
Helix 19
19
A
386 394Right-handed alpha
Helix 20
20
A
394 400Right-handed alpha
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There are 3 sheets in PDB entry 3NDI. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
19 30anti-parallel
Strand 3
A
46 54anti-parallel
Strand 4
A
60 62anti-parallel
Strand 5
A
227 228anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
129 133parallel
Strand 3
A
108 112parallel
Strand 4
A
170 176parallel
Strand 5
A
196 207parallel
Strand 6
A
257 264anti-parallel
Strand 7
A
243 251anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
364 367anti-parallel
Strand 3
A
346 348parallel
Strand 4
A
320 323parallel
Strand 5
A
378 381parallel
Strand 6
A
403 406parallel
Strand 7
A
412 413anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il