Analysis of interatomic Contacts of Structural Units in PDB entry:
3NE5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3NE5 entry

There are 3 chains in PDB entry 3NE5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 79	SER 400
C	ALA 79	SER 402
A	TRP 4	ILE 670

There are 57 helices in PDB entry 3NE5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	B	158	171	Right-handed alpha
Helix 2	2	B	174	188	Right-handed alpha
Helix 3	3	B	191	202	Right-handed alpha
Helix 4	4	B	254	259	Right-handed alpha
Helix 5	5	B	390	397	Right-handed alpha
Helix 6	6	C	85	93	Right-handed alpha
Helix 7	7	C	158	171	Right-handed alpha
Helix 8	8	C	174	187	Right-handed alpha
Helix 9	9	C	191	202	Right-handed alpha
Helix 10	10	C	253	258	Right-handed 310
Helix 11	11	C	381	392	Right-handed alpha
Helix 12	12	C	393	402	Right-handed alpha
Helix 13	13	A	4	12	Right-handed alpha
Helix 14	14	A	12	33	Right-handed alpha
Helix 15	15	A	57	65	Right-handed alpha
Helix 16	16	A	65	74	Right-handed alpha
Helix 17	17	A	102	116	Right-handed alpha
Helix 18	18	A	134	136	Right-handed 310
Helix 19	19	A	152	163	Right-handed alpha
Helix 20	20	A	163	169	Right-handed alpha
Helix 21	21	A	192	199	Right-handed alpha
Helix 22	22	A	202	212	Right-handed alpha
Helix 23	23	A	239	245	Right-handed alpha
Helix 24	24	A	259	262	Right-handed alpha
Helix 25	25	A	296	315	Right-handed alpha
Helix 26	26	A	327	353	Right-handed alpha
Helix 27	27	A	359	368	Right-handed alpha
Helix 28	28	A	370	385	Right-handed alpha
Helix 29	29	A	389	418	Right-handed alpha
Helix 30	30	A	420	425	Right-handed alpha
Helix 31	31	A	433	441	Right-handed alpha
Helix 32	32	A	445	460	Right-handed alpha
Helix 33	33	A	461	467	Right-handed 310
Helix 34	34	A	468	493	Right-handed alpha
Helix 35	35	A	496	504	Right-handed alpha
Helix 36	36	A	517	533	Right-handed alpha
Helix 37	37	A	536	550	Right-handed alpha
Helix 38	38	A	550	555	Right-handed alpha
Helix 39	39	A	581	598	Right-handed alpha
Helix 40	40	A	641	653	Right-handed alpha
Helix 41	41	A	664	675	Right-handed alpha
Helix 42	42	A	689	707	Right-handed alpha
Helix 43	43	A	729	735	Right-handed alpha
Helix 44	44	A	739	749	Right-handed alpha
Helix 45	45	A	773	777	Right-handed 310
Helix 46	46	A	779	784	Right-handed alpha
Helix 47	47	A	832	848	Right-handed alpha
Helix 48	48	A	861	874	Right-handed alpha
Helix 49	49	A	874	891	Right-handed alpha
Helix 50	50	A	893	902	Right-handed alpha
Helix 51	51	A	904	919	Right-handed alpha
Helix 52	52	A	923	952	Right-handed alpha
Helix 53	53	A	955	960	Right-handed alpha
Helix 54	54	A	965	1000	Right-handed alpha
Helix 55	55	A	1005	1012	Right-handed alpha
Helix 56	56	A	1013	1031	Right-handed alpha
Helix 57	57	A	1031	1039	Right-handed alpha

There are 20 sheets in PDB entry 3NE5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	376	378	anti-parallel
Strand 3	B	339	344	anti-parallel
Strand 4	B	332	334	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	376	378	anti-parallel
Strand 3	B	339	344	anti-parallel
Strand 4	B	350	354	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	324	328	anti-parallel
Strand 3	B	364	369	anti-parallel
Strand 4	B	356	361	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	144	first strand
Strand 2	B	216	220	anti-parallel
Strand 3	B	236	251	anti-parallel
Strand 4	B	105	124	anti-parallel
Strand 5	B	312	320	anti-parallel
Strand 6	B	264	268	anti-parallel
Strand 7	B	271	278	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	144	first strand
Strand 2	B	216	220	anti-parallel
Strand 3	B	236	251	anti-parallel
Strand 4	B	293	301	anti-parallel
Strand 5	B	282	283	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	211	first strand
Strand 2	B	149	154	anti-parallel
Strand 3	B	130	135	anti-parallel
Strand 4	B	228	229	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	98	first strand
Strand 2	C	376	380	anti-parallel
Strand 3	C	339	344	anti-parallel
Strand 4	C	333	334	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	98	first strand
Strand 2	C	376	380	anti-parallel
Strand 3	C	339	344	anti-parallel
Strand 4	C	350	354	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	144	first strand
Strand 2	C	216	220	anti-parallel
Strand 3	C	236	251	anti-parallel
Strand 4	C	100	124	anti-parallel
Strand 5	C	312	328	anti-parallel
Strand 6	C	293	301	first strand
Strand 7	C	278	288	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	267	first strand
Strand 2	C	312	328	anti-parallel
Strand 3	C	100	124	anti-parallel
Strand 4	C	236	251	anti-parallel
Strand 5	C	364	369	first strand
Strand 6	C	356	361	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	211	first strand
Strand 2	C	149	154	anti-parallel
Strand 3	C	130	135	anti-parallel
Strand 4	C	228	229	anti-parallel

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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	46	52	anti-parallel
Strand 3	A	90	97	anti-parallel
Strand 4	A	79	87	anti-parallel
Strand 5	A	813	816	anti-parallel
Strand 6	A	819	827	anti-parallel
Strand 7	A	712	715	anti-parallel

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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	46	52	anti-parallel
Strand 3	A	90	97	anti-parallel
Strand 4	A	79	87	anti-parallel
Strand 5	A	813	816	anti-parallel
Strand 6	A	819	827	anti-parallel
Strand 7	A	681	686	anti-parallel
Strand 8	A	855	860	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	181	first strand
Strand 2	A	285	291	anti-parallel
Strand 3	A	138	146	anti-parallel
Strand 4	A	319	326	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	269	first strand
Strand 2	A	185	191	anti-parallel
Strand 3	A	764	771	parallel
Strand 4	A	755	761	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	224	first strand
Strand 2	A	227	233	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	250	first strand
Strand 2	A	256	258	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	278	first strand
Strand 2	A	602	610	anti-parallel
Strand 3	A	626	630	anti-parallel
Strand 4	A	569	572	anti-parallel
Strand 5	A	662	663	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	721	728	first strand
Strand 2	A	802	809	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	787	789	first strand
Strand 2	A	795	797	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3NE5

Analysis of interatomic Contacts of Structural Units in PDB entry:
3NE5