Analysis of interatomic Contacts of Structural Units in PDB entry:
3NE8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NE8 entry

There is 1 chain in PDB entry 3NE8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 178LEU 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3NE8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
202 221Right-handed alpha
Helix 2
2
A
237 248Right-handed alpha
Helix 3
3
A
280 292Right-handed alpha
Helix 4
4
A
293 298Right-handed 310
Helix 5
5
A
309 337Right-handed alpha
Helix 6
6
A
351 355Right-handed 310
Helix 7
7
A
371 379Right-handed alpha
Helix 8
8
A
380 403Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3NE8.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 228first strand
Strand 2
A
180 186parallel
Strand 3
A
252 257parallel
Strand 4
A
361 365parallel
Strand 5
A
269 274anti-parallel
Strand 6
A
341 349parallel
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