Analysis of interatomic Contacts of Structural Units in PDB entry:
3NEJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NEJ entry

There are 2 chains in PDB entry 3NEJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 207
B
 MET 1LYS 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3NEJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 6Right-handed 310
Helix 2
2
A
9 20Right-handed alpha
Helix 3
3
A
25 36Right-handed alpha
Helix 4
4
A
52 61Right-handed alpha
Helix 5
5
A
87 96Right-handed alpha
Helix 6
6
A
111 115Right-handed 310
Helix 7
7
A
116 120Right-handed 310
Helix 8
8
A
127 137Right-handed alpha
Helix 9
9
A
154 160Right-handed alpha
Helix 10
10
A
164 170Right-handed alpha
Helix 11
11
A
187 195Right-handed alpha
Helix 12
12
B
9 18Right-handed alpha
Helix 13
13
B
25 39Right-handed alpha
Helix 14
14
B
52 62Right-handed alpha
Helix 15
15
B
88 96Right-handed alpha
Helix 16
16
B
127 136Right-handed alpha
Helix 17
17
B
152 160Right-handed alpha
Helix 18
18
B
161 171Right-handed alpha
Helix 19
19
B
187 196Right-handed alpha
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There are 2 sheets in PDB entry 3NEJ. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 151first strand
Strand 2
A
177 181parallel
Strand 3
A
41 44parallel
Strand 4
A
201 204parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 104first strand
Strand 2
B
123 126parallel
Strand 3
B
76 78parallel
Strand 4
B
147 150parallel
Strand 5
B
177 181parallel
Strand 6
B
41 44parallel
Strand 7
B
201 204parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il