Analysis of interatomic Contacts of Structural Units in PDB entry:
3NET


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NET entry

There are 2 chains in PDB entry 3NET (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6LEU 461
B
 ASN 8THR 462
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 3NET. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 40Right-handed alpha
Helix 2
2
A
53 58Right-handed alpha
Helix 3
3
A
59 61Right-handed 310
Helix 4
4
A
99 111Right-handed alpha
Helix 5
5
A
112 114Right-handed 310
Helix 6
6
A
154 173Right-handed alpha
Helix 7
7
A
184 194Right-handed alpha
Helix 8
8
A
197 209Right-handed alpha
Helix 9
9
A
210 226Right-handed alpha
Helix 10
10
A
229 241Right-handed alpha
Helix 11
11
A
245 260Right-handed alpha
Helix 12
12
A
263 283Right-handed alpha
Helix 13
13
A
286 288Right-handed 310
Helix 14
14
A
315 319Right-handed 310
Helix 15
15
A
331 335Right-handed 310
Helix 16
16
A
348 358Right-handed alpha
Helix 17
17
A
377 379Right-handed 310
Helix 18
18
A
380 394Right-handed alpha
Helix 19
19
A
406 418Right-handed alpha
Helix 20
20
A
426 432Right-handed alpha
Helix 21
21
A
452 460Right-handed alpha
Helix 22
22
B
19 40Right-handed alpha
Helix 23
23
B
53 58Right-handed alpha
Helix 24
24
B
99 111Right-handed alpha
Helix 25
25
B
112 114Right-handed 310
Helix 26
26
B
155 173Right-handed alpha
Helix 27
27
B
184 192Right-handed alpha
Helix 28
28
B
197 205Right-handed alpha
Helix 29
29
B
236 241Right-handed alpha
Helix 30
30
B
245 260Right-handed alpha
Helix 31
31
B
263 283Right-handed alpha
Helix 32
32
B
286 288Right-handed 310
Helix 33
33
B
315 319Right-handed 310
Helix 34
34
B
348 358Right-handed alpha
Helix 35
35
B
377 379Right-handed 310
Helix 36
36
B
380 394Right-handed alpha
Helix 37
37
B
406 417Right-handed alpha
Helix 38
38
B
426 432Right-handed alpha
Helix 39
39
B
450 462Right-handed alpha
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There are 9 sheets in PDB entry 3NET. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
118 122parallel
Strand 3
A
139 148anti-parallel
Strand 4
A
125 127anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
118 122parallel
Strand 3
A
139 148anti-parallel
Strand 4
A
341 347anti-parallel
Strand 5
A
323 327anti-parallel
Strand 6
A
303 312anti-parallel
Strand 7
A
177 183anti-parallel
Strand 8
A
290 292parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
93 95anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 73first strand
Strand 2
B
67 73anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 400first strand
Strand 2
A
371 373parallel
Strand 3
A
421 424parallel
Strand 4
A
436 439anti-parallel
Strand 5
A
444 447anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
118 122parallel
Strand 3
B
139 148anti-parallel
Strand 4
B
125 127anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
118 122parallel
Strand 3
B
139 148anti-parallel
Strand 4
B
341 347anti-parallel
Strand 5
B
323 327anti-parallel
Strand 6
B
303 312anti-parallel
Strand 7
B
177 183anti-parallel
Strand 8
B
290 292parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
93 95anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
398 400first strand
Strand 2
B
371 373parallel
Strand 3
B
421 424parallel
Strand 4
B
434 439anti-parallel
Strand 5
B
445 449anti-parallel
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