Analysis of interatomic Contacts of Structural Units in PDB entry:
3NEY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NEY entry

There are 6 chains in PDB entry 3NEY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 279GLN 458
B
 PHE 279GLN 458
C
 PHE 279GLN 458
D
 PHE 279GLN 458
F
 GLY 281GLN 458
E
 PHE 279GLN 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 3NEY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
294 306Right-handed alpha
Helix 2
2
A
335 345Right-handed alpha
Helix 3
3
A
363 372Right-handed alpha
Helix 4
4
A
381 383Right-handed 310
Helix 5
5
A
384 389Right-handed alpha
Helix 6
6
A
409 427Right-handed alpha
Helix 7
7
A
428 430Right-handed 310
Helix 8
8
A
438 453Right-handed alpha
Helix 9
9
B
294 306Right-handed alpha
Helix 10
10
B
335 345Right-handed alpha
Helix 11
11
B
363 372Right-handed alpha
Helix 12
12
B
381 383Right-handed 310
Helix 13
13
B
384 389Right-handed alpha
Helix 14
14
B
409 427Right-handed alpha
Helix 15
15
B
428 430Right-handed 310
Helix 16
16
B
438 453Right-handed alpha
Helix 17
17
C
294 306Right-handed alpha
Helix 18
18
C
335 345Right-handed alpha
Helix 19
19
C
363 372Right-handed alpha
Helix 20
20
C
381 383Right-handed 310
Helix 21
21
C
384 389Right-handed alpha
Helix 22
22
C
409 427Right-handed alpha
Helix 23
23
C
428 430Right-handed 310
Helix 24
24
C
438 453Right-handed alpha
Helix 25
25
D
294 306Right-handed alpha
Helix 26
26
D
335 345Right-handed alpha
Helix 27
27
D
363 372Right-handed alpha
Helix 28
28
D
381 383Right-handed 310
Helix 29
29
D
384 389Right-handed alpha
Helix 30
30
D
409 427Right-handed alpha
Helix 31
31
D
428 430Right-handed 310
Helix 32
32
D
438 453Right-handed alpha
Helix 33
33
F
294 306Right-handed alpha
Helix 34
34
F
335 345Right-handed alpha
Helix 35
35
F
363 372Right-handed alpha
Helix 36
36
F
381 383Right-handed 310
Helix 37
37
F
384 389Right-handed alpha
Helix 38
38
F
409 427Right-handed alpha
Helix 39
39
F
428 430Right-handed 310
Helix 40
40
F
438 453Right-handed alpha
Helix 41
41
E
294 306Right-handed alpha
Helix 42
42
E
335 345Right-handed alpha
Helix 43
43
E
363 372Right-handed alpha
Helix 44
44
E
381 383Right-handed 310
Helix 45
45
E
384 389Right-handed alpha
Helix 46
46
E
409 427Right-handed alpha
Helix 47
47
E
428 430Right-handed 310
Helix 48
48
E
438 453Right-handed alpha
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There are 12 sheets in PDB entry 3NEY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 311first strand
Strand 2
A
375 379parallel
Strand 3
A
284 288parallel
Strand 4
A
395 402parallel
Strand 5
A
432 436parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 333first strand
Strand 2
A
316 317parallel
Strand 3
A
357 362anti-parallel
Strand 4
A
348 354anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 311first strand
Strand 2
B
375 379parallel
Strand 3
B
284 288parallel
Strand 4
B
395 401parallel
Strand 5
B
432 435parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 333first strand
Strand 2
B
316 317parallel
Strand 3
B
357 362anti-parallel
Strand 4
B
348 354anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
310 311first strand
Strand 2
C
375 379parallel
Strand 3
C
284 288parallel
Strand 4
C
395 401parallel
Strand 5
C
432 435parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
332 333first strand
Strand 2
C
316 317parallel
Strand 3
C
357 362anti-parallel
Strand 4
C
348 354anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
310 311first strand
Strand 2
D
375 379parallel
Strand 3
D
284 288parallel
Strand 4
D
395 401parallel
Strand 5
D
432 435parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
332 333first strand
Strand 2
D
316 317parallel
Strand 3
D
357 362anti-parallel
Strand 4
D
348 354anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
310 311first strand
Strand 2
F
375 379parallel
Strand 3
F
284 288parallel
Strand 4
F
395 401parallel
Strand 5
F
432 435parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
332 333first strand
Strand 2
F
316 317parallel
Strand 3
F
357 362anti-parallel
Strand 4
F
348 354anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
310 311first strand
Strand 2
E
375 379parallel
Strand 3
E
284 288parallel
Strand 4
E
395 401parallel
Strand 5
E
432 435parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
332 333first strand
Strand 2
E
316 317parallel
Strand 3
E
357 362anti-parallel
Strand 4
E
348 354anti-parallel
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