Analysis of interatomic Contacts of Structural Units in PDB entry:
3NF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NF5 entry

There are 2 chains in PDB entry 3NF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 880GLU 1035
B
 SER 880GLU 1035
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3NF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
899 906Right-handed alpha
Helix 2
2
A
907 912Right-handed alpha
Helix 3
3
A
939 943Right-handed 310
Helix 4
4
A
999 1011Right-handed alpha
Helix 5
5
B
899 904Right-handed alpha
Helix 6
6
B
909 914Right-handed 310
Helix 7
7
B
939 943Right-handed 310
Helix 8
8
B
999 1009Right-handed alpha
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There are 4 sheets in PDB entry 3NF5. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
894 897first strand
Strand 2
A
918 921anti-parallel
Strand 3
A
925 929anti-parallel
Strand 4
A
975 979anti-parallel
Strand 5
A
1025 1030anti-parallel
Strand 6
A
1015 1020anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
948 951first strand
Strand 2
A
954 957anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
894 897first strand
Strand 2
B
918 921anti-parallel
Strand 3
B
925 929anti-parallel
Strand 4
B
975 979anti-parallel
Strand 5
B
1026 1030anti-parallel
Strand 6
B
1015 1019anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
948 951first strand
Strand 2
B
954 957anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il