Analysis of interatomic Contacts of Structural Units in PDB entry:
3NFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NFV entry

There is 1 chain in PDB entry 3NFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLU 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3NFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 38Right-handed alpha
Helix 2
2
A
44 61Right-handed alpha
Helix 3
3
A
65 69Right-handed 310
Helix 4
4
A
108 114Right-handed 310
Helix 5
5
A
115 137Right-handed alpha
Helix 6
6
A
138 154Right-handed alpha
Helix 7
7
A
173 177Right-handed 310
Helix 8
8
A
179 187Right-handed 310
Helix 9
9
A
188 199Right-handed alpha
Helix 10
10
A
206 227Right-handed alpha
Helix 11
11
A
227 235Right-handed alpha
Helix 12
12
A
238 255Right-handed alpha
Helix 13
13
A
257 272Right-handed alpha
Helix 14
14
A
272 277Right-handed alpha
Helix 15
15
A
283 288Right-handed alpha
Helix 16
16
A
291 313Right-handed alpha
Helix 17
17
A
327 336Right-handed alpha
Helix 18
18
A
337 339Right-handed 310
Helix 19
19
A
342 346Right-handed 310
Helix 20
20
A
353 370Right-handed alpha
Helix 21
21
A
371 375Right-handed 310
Helix 22
22
A
376 383Right-handed alpha
Helix 23
23
A
392 397Right-handed alpha
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There are 2 sheets in PDB entry 3NFV. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
166 169parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
101 102anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il