Analysis of interatomic Contacts of Structural Units in PDB entry:
3NGC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NGC entry

There is 1 chain in PDB entry 3NGC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 MET 1SER 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3NGC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
10 23Right-handed alpha
Helix 2
2
X
65 76Right-handed alpha
Helix 3
3
X
104 106Right-handed 310
Helix 4
4
X
107 123Right-handed alpha
Helix 5
5
X
142 151Right-handed alpha
Helix 6
6
X
153 169Right-handed alpha
Helix 7
7
X
176 187Right-handed alpha
Helix 8
8
X
190 197Right-handed alpha
Helix 9
9
X
205 215Right-handed alpha
Helix 10
10
X
256 263Right-handed 310
Helix 11
11
X
270 280Right-handed alpha
Helix 12
12
X
336 348Right-handed alpha
Helix 13
13
X
377 382Right-handed alpha
Helix 14
14
X
383 388Right-handed 310
Helix 15
15
X
397 401Right-handed 310
Helix 16
16
X
407 424Right-handed alpha
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There are 5 sheets in PDB entry 3NGC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
220 221first strand
Strand 2
X
27 30parallel
Strand 3
X
2 7parallel
Strand 4
X
246 253parallel
Strand 5
X
236 240anti-parallel
Strand 6
X
226 230anti-parallel
Strand 7
X
264 266parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
220 221first strand
Strand 2
X
27 30parallel
Strand 3
X
2 7parallel
Strand 4
X
246 253parallel
Strand 5
X
393 395parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
42 44first strand
Strand 2
X
52 54anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
59 60first strand
Strand 2
X
200 202anti-parallel
Strand 3
X
79 80anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
87 88first strand
Strand 2
X
299 302parallel
Strand 3
X
309 315anti-parallel
Strand 4
X
320 328anti-parallel
Strand 5
X
285 293anti-parallel
Strand 6
X
352 357anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il