Analysis of interatomic Contacts of Structural Units in PDB entry:
3NGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NGV entry

There is 1 chain in PDB entry 3NGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2PHE 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 3NGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 24Right-handed alpha
Helix 2
2
A
26 28Right-handed 310
Helix 3
3
A
29 39Right-handed alpha
Helix 4
4
A
46 60Right-handed alpha
Helix 5
5
A
73 87Right-handed alpha
Helix 6
6
A
89 102Right-handed alpha
Helix 7
7
A
109 132Right-handed alpha
Helix 8
8
A
135 146Right-handed alpha
Helix 9
9
A
155 165Right-handed alpha
Helix 10
10
A
184 198Right-handed alpha
Helix 11
11
A
207 218Right-handed alpha
Helix 12
12
A
219 222Right-handed 310
Helix 13
13
A
223 233Right-handed alpha
Helix 14
14
A
238 249Right-handed alpha
Helix 15
15
A
251 268Right-handed alpha
Helix 16
16
A
271 275Right-handed 310
Helix 17
17
A
280 292Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3NGV. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
69 70anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
205 206anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il