Analysis of interatomic Contacts of Structural Units in PDB entry:
3NH6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NH6 entry

There is 1 chain in PDB entry 3NH6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 555GLN 828
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3NH6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
560 573Right-handed alpha
Helix 2
2
A
627 637Right-handed alpha
Helix 3
3
A
658 665Right-handed alpha
Helix 4
4
A
680 686Right-handed alpha
Helix 5
5
A
692 703Right-handed alpha
Helix 6
6
A
705 712Right-handed alpha
Helix 7
7
A
714 717Right-handed 310
Helix 8
8
A
728 744Right-handed alpha
Helix 9
9
A
758 774Right-handed alpha
Helix 10
10
A
784 790Right-handed alpha
Helix 11
11
A
807 815Right-handed alpha
Helix 12
12
A
816 827Right-handed alpha
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There are 3 sheets in PDB entry 3NH6. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
604 613first strand
Strand 2
A
590 598anti-parallel
Strand 3
A
644 649anti-parallel
Strand 4
A
652 653anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
666 669first strand
Strand 2
A
747 751parallel
Strand 3
A
777 781parallel
Strand 4
A
618 622parallel
Strand 5
A
793 798parallel
Strand 6
A
801 806anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
678 679first strand
Strand 2
A
719 720anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il