Analysis of interatomic Contacts of Structural Units in PDB entry:
3NJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NJB entry

There are 2 chains in PDB entry 3NJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8VAL 312
B
 PRO 7VAL 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3NJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 35Right-handed 310
Helix 2
2
A
40 56Right-handed alpha
Helix 3
3
A
99 106Right-handed alpha
Helix 4
4
A
114 130Right-handed alpha
Helix 5
5
A
130 135Right-handed alpha
Helix 6
6
A
149 156Right-handed alpha
Helix 7
7
A
172 175Right-handed 310
Helix 8
8
A
184 190Right-handed alpha
Helix 9
9
A
190 199Right-handed alpha
Helix 10
10
A
206 212Right-handed alpha
Helix 11
11
A
220 222Right-handed 310
Helix 12
12
A
223 237Right-handed alpha
Helix 13
13
A
239 257Right-handed alpha
Helix 14
14
A
258 276Right-handed alpha
Helix 15
15
A
276 290Right-handed alpha
Helix 16
16
A
290 300Right-handed alpha
Helix 17
17
A
301 303Right-handed 310
Helix 18
18
B
31 35Right-handed 310
Helix 19
19
B
40 56Right-handed alpha
Helix 20
20
B
99 106Right-handed alpha
Helix 21
21
B
114 130Right-handed alpha
Helix 22
22
B
130 135Right-handed alpha
Helix 23
23
B
149 156Right-handed alpha
Helix 24
24
B
172 176Right-handed 310
Helix 25
25
B
184 190Right-handed alpha
Helix 26
26
B
190 199Right-handed alpha
Helix 27
27
B
206 212Right-handed alpha
Helix 28
28
B
220 222Right-handed 310
Helix 29
29
B
223 237Right-handed alpha
Helix 30
30
B
239 257Right-handed alpha
Helix 31
31
B
258 274Right-handed alpha
Helix 32
32
B
276 290Right-handed alpha
Helix 33
33
B
290 300Right-handed alpha
Helix 34
34
B
301 303Right-handed 310
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There are 4 sheets in PDB entry 3NJB. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 21first strand
Strand 2
A
24 29anti-parallel
Strand 3
A
61 66parallel
Strand 4
A
139 143parallel
Strand 5
A
160 163parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
168 170parallel
Strand 3
A
203 205anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 21first strand
Strand 2
B
24 29anti-parallel
Strand 3
B
61 66parallel
Strand 4
B
139 143parallel
Strand 5
B
160 163parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 148first strand
Strand 2
B
168 170parallel
Strand 3
B
203 205anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il