Analysis of interatomic Contacts of Structural Units in PDB entry:
3NJH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3NJH entry

There are 4 chains in PDB entry 3NJH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 4	GLN 124
B	PRO 4	GLN 124
C	PRO 4	PRO 123
D	PRO 4	ASN 125

There are no helices in PDB entry 3NJH

There are 8 sheets in PDB entry 3NJH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	27	first strand
Strand 2	A	8	18	anti-parallel
Strand 3	A	44	52	parallel
Strand 4	A	84	89	anti-parallel
Strand 5	A	75	78	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	39	first strand
Strand 2	A	118	122	parallel
Strand 3	A	95	104	anti-parallel
Strand 4	A	59	65	anti-parallel
Strand 5	B	111	113	parallel
Strand 6	B	95	104	anti-parallel
Strand 7	B	118	122	anti-parallel
Strand 8	B	38	39	parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	39	first strand
Strand 2	A	118	122	parallel
Strand 3	A	95	104	anti-parallel
Strand 4	A	111	113	anti-parallel
Strand 5	B	59	65	parallel
Strand 6	B	95	104	anti-parallel
Strand 7	B	118	122	anti-parallel
Strand 8	B	38	39	parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	27	first strand
Strand 2	B	7	18	anti-parallel
Strand 3	B	44	52	parallel
Strand 4	B	84	89	anti-parallel
Strand 5	B	75	78	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	27	first strand
Strand 2	C	7	18	anti-parallel
Strand 3	C	44	52	parallel
Strand 4	C	84	89	anti-parallel
Strand 5	C	75	78	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	39	first strand
Strand 2	C	118	122	parallel
Strand 3	C	95	104	anti-parallel
Strand 4	C	59	65	anti-parallel
Strand 5	D	111	113	parallel
Strand 6	D	95	104	anti-parallel
Strand 7	D	118	122	anti-parallel
Strand 8	D	38	39	parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	39	first strand
Strand 2	C	118	122	parallel
Strand 3	C	95	104	anti-parallel
Strand 4	C	111	113	anti-parallel
Strand 5	D	59	65	parallel
Strand 6	D	95	104	anti-parallel
Strand 7	D	118	122	anti-parallel
Strand 8	D	38	39	parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	27	first strand
Strand 2	D	8	18	anti-parallel
Strand 3	D	44	52	parallel
Strand 4	D	84	89	anti-parallel
Strand 5	D	75	78	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3NJH

Analysis of interatomic Contacts of Structural Units in PDB entry:
3NJH