Analysis of interatomic Contacts of Structural Units in PDB entry:
3NJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NJR entry

There are 2 chains in PDB entry 3NJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0ARG 183
B
 MET 0ARG 183
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3NJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 11Right-handed 310
Helix 2
2
A
19 31Right-handed alpha
Helix 3
3
A
46 55Right-handed alpha
Helix 4
4
A
65 79Right-handed alpha
Helix 5
5
A
93 97Right-handed 310
Helix 6
6
A
112 123Right-handed alpha
Helix 7
7
A
135 150Right-handed alpha
Helix 8
8
B
7 11Right-handed 310
Helix 9
9
B
19 31Right-handed alpha
Helix 10
10
B
46 55Right-handed alpha
Helix 11
11
B
65 79Right-handed alpha
Helix 12
12
B
93 97Right-handed 310
Helix 13
13
B
112 123Right-handed alpha
Helix 14
14
B
135 150Right-handed alpha
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There are 2 sheets in PDB entry 3NJR. Click on sheet of interest to get list of strands forming it: A, B,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 89first strand
Strand 2
A
58 63parallel
Strand 3
A
37 41parallel
Strand 4
A
104 107parallel
Strand 5
A
128 133parallel
Strand 6
A
176 182anti-parallel
Strand 7
A
152 164anti-parallel
Strand 8
B
152 163anti-parallel
Strand 9
B
176 182anti-parallel
Strand 10
B
128 133anti-parallel
Strand 11
B
104 107parallel
Strand 12
B
37 41parallel
Strand 13
B
58 63parallel
Strand 14
B
85 89parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 170first strand
Strand 2
A
152 164anti-parallel
Strand 3
B
152 163anti-parallel
Strand 4
B
168 170anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il