Analysis of interatomic Contacts of Structural Units in PDB entry:
3NJT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NJT entry

There is 1 chain in PDB entry 3NJT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3PHE 554
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 3NJT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 29Right-handed alpha
Helix 2
2
A
78 85Right-handed 310
Helix 3
3
A
90 108Right-handed alpha
Helix 4
4
A
148 159Right-handed alpha
Helix 5
5
A
168 180Right-handed alpha
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There are 3 sheets in PDB entry 3NJT. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
127 132parallel
Strand 3
A
114 116anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
135 141anti-parallel
Strand 3
A
198 207parallel
Strand 4
A
184 192anti-parallel
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There are 17 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 218first strand
Strand 2
A
231 239anti-parallel
Strand 3
A
247 255anti-parallel
Strand 4
A
264 276anti-parallel
Strand 5
A
279 291anti-parallel
Strand 6
A
304 319anti-parallel
Strand 7
A
324 340anti-parallel
Strand 8
A
352 364anti-parallel
Strand 9
A
369 380anti-parallel
Strand 10
A
401 415anti-parallel
Strand 11
A
418 429anti-parallel
Strand 12
A
470 480anti-parallel
Strand 13
A
486 498anti-parallel
Strand 14
A
504 518anti-parallel
Strand 15
A
522 530anti-parallel
Strand 16
A
545 554anti-parallel
Strand 17
A
212 218anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il