Analysis of interatomic Contacts of Structural Units in PDB entry:
3NJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NJV entry

There is 1 chain in PDB entry 3NJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLN 508
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3NJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
123 128Right-handed 310
Helix 2
2
A
151 154Right-handed 310
Helix 3
3
A
156 160Right-handed 310
Helix 4
4
A
240 246Right-handed 310
Helix 5
5
A
253 257Right-handed 310
Helix 6
6
A
357 362Right-handed alpha
Helix 7
7
A
385 389Right-handed 310
Helix 8
8
A
408 412Right-handed 310
Helix 9
9
A
492 496Right-handed 310
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There are 10 sheets in PDB entry 3NJV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
10 14anti-parallel
Strand 3
A
21 26anti-parallel
Strand 4
A
32 37anti-parallel
Strand 5
A
40 41anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
106 112anti-parallel
Strand 3
A
200 207anti-parallel
Strand 4
A
193 195anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 65first strand
Strand 2
A
68 74anti-parallel
Strand 3
A
78 85anti-parallel
Strand 4
A
90 97anti-parallel
Strand 5
A
219 229anti-parallel
Strand 6
A
171 175anti-parallel
Strand 7
A
162 166anti-parallel
Strand 8
A
119 121anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
140 143anti-parallel
Strand 3
A
146 149anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
259 265anti-parallel
Strand 3
A
327 329parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
259 265anti-parallel
Strand 3
A
332 333parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 287first strand
Strand 2
A
273 278anti-parallel
Strand 3
A
302 310anti-parallel
Strand 4
A
313 322anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 345first strand
Strand 2
A
498 507anti-parallel
Strand 3
A
392 394anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 345first strand
Strand 2
A
498 507anti-parallel
Strand 3
A
415 425anti-parallel
Strand 4
A
464 469anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 380first strand
Strand 2
A
401 407parallel
Strand 3
A
477 486anti-parallel
Strand 4
A
429 434anti-parallel
Strand 5
A
437 438anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il