Analysis of interatomic Contacts of Structural Units in PDB entry:
3NK3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NK3 entry

There are 4 chains in PDB entry 3NK3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
TYR 51PRO 343
B
THR 52PRO 343
C
VAL 368HIS 388
D
VAL 368ALA 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 3NK3. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
80 82Right-handed 310
Helix 2
2
A
253 256Right-handed 310
Helix 3
3
A
329 332Right-handed 310
Helix 4
4
A
333 337Right-handed alpha
Helix 5
1
B
80 82Right-handed 310
Helix 6
2
B
253 256Right-handed 310
Helix 7
3
B
329 332Right-handed 310
Helix 8
4
B
333 337Right-handed alpha
Back to top of page

There are 19 sheets in PDB entry 3NK3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
54 59first strand
Strand 2
A
62 68anti-parallel
Strand 3
A
101 107anti-parallel
Strand 4
A
93 96anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
83 86first strand
Strand 2
A
121 131anti-parallel
Strand 3
A
145 155anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
113 118first strand
Strand 2
A
121 131anti-parallel
Strand 3
A
145 155anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
169 169first strand
Strand 2
A
218 220parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
183 190first strand
Strand 2
A
206 215anti-parallel
Strand 3
A
272 280anti-parallel
Strand 4
A
263 265anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
183 190first strand
Strand 2
A
195 197anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
242 247first strand
Strand 2
A
221 232anti-parallel
Strand 3
A
289 302anti-parallel
Strand 4
C
368 380anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
250 252first strand
Strand 2
A
312 316parallel
Strand 3
A
321 325anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
199 202first strand
Strand 2
C
368 380parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
139 141first strand
Strand 2
B
282 284anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
282 284first strand
Strand 2
B
139 141anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
54 59first strand
Strand 2
B
62 68anti-parallel
Strand 3
B
101 107anti-parallel
Strand 4
B
93 96anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
83 86first strand
Strand 2
B
121 131anti-parallel
Strand 3
B
145 155anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
113 118first strand
Strand 2
B
121 131anti-parallel
Strand 3
B
145 155anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
183 190first strand
Strand 2
B
206 215anti-parallel
Strand 3
B
272 280anti-parallel
Strand 4
B
263 265anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
183 190first strand
Strand 2
B
195 197anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
242 247first strand
Strand 2
B
221 232anti-parallel
Strand 3
B
289 302anti-parallel
Strand 4
D
368 380anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
250 252first strand
Strand 2
B
312 316parallel
Strand 3
B
321 325anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
199 202first strand
Strand 2
D
368 380parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il