Analysis of interatomic Contacts of Structural Units in PDB entry:
3NKE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NKE entry

There are 3 chains in PDB entry 3NKE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 94PRO 280
B
 GLY 92ALA 281
C
 GLY 92ALA 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3NKE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
94 108Right-handed alpha
Helix 2
2
A
108 125Right-handed alpha
Helix 3
3
A
133 157Right-handed alpha
Helix 4
4
A
174 198Right-handed alpha
Helix 5
5
A
213 224Right-handed alpha
Helix 6
6
A
227 239Right-handed alpha
Helix 7
7
A
242 259Right-handed alpha
Helix 8
8
A
259 274Right-handed alpha
Helix 9
9
B
93 108Right-handed alpha
Helix 10
10
B
108 125Right-handed alpha
Helix 11
11
B
133 157Right-handed alpha
Helix 12
12
B
174 199Right-handed alpha
Helix 13
13
B
213 224Right-handed alpha
Helix 14
14
B
227 238Right-handed alpha
Helix 15
15
B
242 259Right-handed alpha
Helix 16
16
B
259 274Right-handed alpha
Helix 17
17
C
92 108Right-handed alpha
Helix 18
18
C
108 125Right-handed alpha
Helix 19
19
C
133 157Right-handed alpha
Helix 20
20
C
174 198Right-handed alpha
Helix 21
21
C
213 224Right-handed alpha
Helix 22
22
C
227 239Right-handed alpha
Helix 23
23
C
242 259Right-handed alpha
Helix 24
24
C
259 274Right-handed alpha
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There are no sheets in PDB entry 3NKE
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il