Analysis of interatomic Contacts of Structural Units in PDB entry:
3NL2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NL2 entry

There are 6 chains in PDB entry 3NL2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2THR 540
B
 LYS 2THR 540
C
 LYS 2THR 540
D
 LYS 2THR 540
E
 LYS 2THR 540
F
 LYS 2THR 540
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are132 helices in PDB entry 3NL2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 8Right-handed 310
Helix 2
2
A
26 37Right-handed alpha
Helix 3
3
A
52 68Right-handed alpha
Helix 4
4
A
77 85Right-handed alpha
Helix 5
5
A
97 106Right-handed alpha
Helix 6
6
A
118 127Right-handed alpha
Helix 7
7
A
154 169Right-handed alpha
Helix 8
8
A
186 194Right-handed alpha
Helix 9
9
A
217 230Right-handed alpha
Helix 10
10
A
249 264Right-handed alpha
Helix 11
11
A
272 286Right-handed alpha
Helix 12
12
A
297 305Right-handed alpha
Helix 13
13
A
319 333Right-handed alpha
Helix 14
14
A
347 358Right-handed alpha
Helix 15
15
A
370 378Right-handed alpha
Helix 16
16
A
395 409Right-handed alpha
Helix 17
17
A
426 430Right-handed 310
Helix 18
18
A
441 445Right-handed 310
Helix 19
19
A
465 479Right-handed alpha
Helix 20
20
A
484 507Right-handed alpha
Helix 21
21
A
509 527Right-handed alpha
Helix 22
22
A
529 533Right-handed 310
Helix 23
23
B
4 8Right-handed 310
Helix 24
24
B
26 36Right-handed alpha
Helix 25
25
B
52 68Right-handed alpha
Helix 26
26
B
77 85Right-handed alpha
Helix 27
27
B
97 106Right-handed alpha
Helix 28
28
B
117 127Right-handed alpha
Helix 29
29
B
154 169Right-handed alpha
Helix 30
30
B
186 194Right-handed alpha
Helix 31
31
B
217 230Right-handed alpha
Helix 32
32
B
249 264Right-handed alpha
Helix 33
33
B
272 286Right-handed alpha
Helix 34
34
B
297 303Right-handed alpha
Helix 35
35
B
319 333Right-handed alpha
Helix 36
36
B
348 358Right-handed alpha
Helix 37
37
B
370 378Right-handed alpha
Helix 38
38
B
395 409Right-handed alpha
Helix 39
39
B
426 430Right-handed 310
Helix 40
40
B
441 445Right-handed 310
Helix 41
41
B
465 479Right-handed alpha
Helix 42
42
B
484 507Right-handed alpha
Helix 43
43
B
509 527Right-handed alpha
Helix 44
44
B
529 533Right-handed 310
Helix 45
45
C
4 8Right-handed 310
Helix 46
46
C
26 37Right-handed alpha
Helix 47
47
C
52 68Right-handed alpha
Helix 48
48
C
77 84Right-handed alpha
Helix 49
49
C
97 106Right-handed alpha
Helix 50
50
C
118 127Right-handed alpha
Helix 51
51
C
154 169Right-handed alpha
Helix 52
52
C
186 194Right-handed alpha
Helix 53
53
C
217 230Right-handed alpha
Helix 54
54
C
249 264Right-handed alpha
Helix 55
55
C
274 286Right-handed alpha
Helix 56
56
C
297 303Right-handed alpha
Helix 57
57
C
319 333Right-handed alpha
Helix 58
58
C
347 358Right-handed alpha
Helix 59
59
C
370 378Right-handed alpha
Helix 60
60
C
395 409Right-handed alpha
Helix 61
61
C
426 430Right-handed 310
Helix 62
62
C
441 445Right-handed 310
Helix 63
63
C
465 479Right-handed alpha
Helix 64
64
C
484 507Right-handed alpha
Helix 65
65
C
509 527Right-handed alpha
Helix 66
66
C
529 533Right-handed 310
Helix 67
67
D
4 8Right-handed 310
Helix 68
68
D
26 37Right-handed alpha
Helix 69
69
D
50 68Right-handed alpha
Helix 70
70
D
77 85Right-handed alpha
Helix 71
71
D
97 106Right-handed alpha
Helix 72
72
D
118 127Right-handed alpha
Helix 73
73
D
154 169Right-handed alpha
Helix 74
74
D
186 194Right-handed alpha
Helix 75
75
D
217 230Right-handed alpha
Helix 76
76
D
249 264Right-handed alpha
Helix 77
77
D
274 286Right-handed alpha
Helix 78
78
D
297 305Right-handed alpha
Helix 79
79
D
319 333Right-handed alpha
Helix 80
80
D
347 358Right-handed alpha
Helix 81
81
D
370 378Right-handed alpha
Helix 82
82
D
395 409Right-handed alpha
Helix 83
83
D
426 430Right-handed 310
Helix 84
84
D
441 445Right-handed 310
Helix 85
85
D
465 479Right-handed alpha
Helix 86
86
D
484 507Right-handed alpha
Helix 87
87
D
509 527Right-handed alpha
Helix 88
88
D
529 533Right-handed 310
Helix 89
89
E
4 8Right-handed 310
Helix 90
90
E
26 37Right-handed alpha
Helix 91
91
E
50 68Right-handed alpha
Helix 92
92
E
77 85Right-handed alpha
Helix 93
93
E
97 106Right-handed alpha
Helix 94
94
E
117 127Right-handed alpha
Helix 95
95
E
154 169Right-handed alpha
Helix 96
96
E
186 194Right-handed alpha
Helix 97
97
E
217 230Right-handed alpha
Helix 98
98
E
249 264Right-handed alpha
Helix 99
99
E
274 286Right-handed alpha
Helix 100
100
E
297 303Right-handed alpha
Helix 101
101
E
319 333Right-handed alpha
Helix 102
102
E
347 358Right-handed alpha
Helix 103
103
E
370 378Right-handed alpha
Helix 104
104
E
395 409Right-handed alpha
Helix 105
105
E
426 430Right-handed 310
Helix 106
106
E
441 445Right-handed 310
Helix 107
107
E
465 479Right-handed alpha
Helix 108
108
E
484 507Right-handed alpha
Helix 109
109
E
509 527Right-handed alpha
Helix 110
110
E
529 533Right-handed 310
Helix 111
111
F
4 8Right-handed 310
Helix 112
112
F
26 37Right-handed alpha
Helix 113
113
F
52 68Right-handed alpha
Helix 114
114
F
77 85Right-handed alpha
Helix 115
115
F
97 105Right-handed alpha
Helix 116
116
F
117 127Right-handed alpha
Helix 117
117
F
154 169Right-handed alpha
Helix 118
118
F
186 194Right-handed alpha
Helix 119
119
F
217 230Right-handed alpha
Helix 120
120
F
249 264Right-handed alpha
Helix 121
121
F
274 286Right-handed alpha
Helix 122
122
F
297 305Right-handed alpha
Helix 123
123
F
319 333Right-handed alpha
Helix 124
124
F
347 358Right-handed alpha
Helix 125
125
F
370 378Right-handed alpha
Helix 126
126
F
395 409Right-handed alpha
Helix 127
127
F
426 430Right-handed 310
Helix 128
128
F
441 445Right-handed 310
Helix 129
129
F
467 479Right-handed alpha
Helix 130
130
F
484 507Right-handed alpha
Helix 131
131
F
509 527Right-handed alpha
Helix 132
132
F
529 533Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 3NL2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
41 45parallel
Strand 3
A
72 75parallel
Strand 4
A
88 91parallel
Strand 5
A
110 115parallel
Strand 6
A
134 137parallel
Strand 7
A
175 179parallel
Strand 8
A
205 208parallel
Strand 9
A
12 15parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
266 270parallel
Strand 3
A
308 313parallel
Strand 4
A
337 340parallel
Strand 5
A
365 369parallel
Strand 6
A
412 416parallel
Strand 7
A
419 424anti-parallel
Strand 8
A
447 451anti-parallel
Strand 9
A
536 539anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 15first strand
Strand 2
B
41 45parallel
Strand 3
B
72 75parallel
Strand 4
B
88 91parallel
Strand 5
B
110 115parallel
Strand 6
B
134 137parallel
Strand 7
B
175 179parallel
Strand 8
B
205 208parallel
Strand 9
B
12 15parallel
Back to list of sheets
Back to top of page

There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 291first strand
Strand 2
B
266 270parallel
Strand 3
B
308 313parallel
Strand 4
B
337 340parallel
Strand 5
B
365 369parallel
Strand 6
B
412 416parallel
Strand 7
B
419 424anti-parallel
Strand 8
B
447 451anti-parallel
Strand 9
B
536 539anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 15first strand
Strand 2
C
41 45parallel
Strand 3
C
72 75parallel
Strand 4
C
88 91parallel
Strand 5
C
110 115parallel
Strand 6
C
134 137parallel
Strand 7
C
175 179parallel
Strand 8
C
205 208parallel
Strand 9
C
12 15parallel
Back to list of sheets
Back to top of page

There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
290 291first strand
Strand 2
C
266 270parallel
Strand 3
C
308 313parallel
Strand 4
C
337 340parallel
Strand 5
C
365 369parallel
Strand 6
C
412 416parallel
Strand 7
C
420 424anti-parallel
Strand 8
C
447 451anti-parallel
Strand 9
C
536 539anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 15first strand
Strand 2
D
41 45parallel
Strand 3
D
72 75parallel
Strand 4
D
88 91parallel
Strand 5
D
110 115parallel
Strand 6
D
134 137parallel
Strand 7
D
175 179parallel
Strand 8
D
205 208parallel
Strand 9
D
12 15parallel
Back to list of sheets
Back to top of page

There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
290 291first strand
Strand 2
D
266 270parallel
Strand 3
D
308 313parallel
Strand 4
D
337 340parallel
Strand 5
D
365 369parallel
Strand 6
D
412 416parallel
Strand 7
D
420 424anti-parallel
Strand 8
D
447 451anti-parallel
Strand 9
D
536 539anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 15first strand
Strand 2
E
41 45parallel
Strand 3
E
72 75parallel
Strand 4
E
88 91parallel
Strand 5
E
110 115parallel
Strand 6
E
134 137parallel
Strand 7
E
175 179parallel
Strand 8
E
205 208parallel
Strand 9
E
12 15parallel
Back to list of sheets
Back to top of page

There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
290 291first strand
Strand 2
E
266 270parallel
Strand 3
E
308 313parallel
Strand 4
E
337 340parallel
Strand 5
E
365 369parallel
Strand 6
E
412 416parallel
Strand 7
E
419 424anti-parallel
Strand 8
E
447 451anti-parallel
Strand 9
E
536 539anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 15first strand
Strand 2
F
41 44parallel
Strand 3
F
72 75parallel
Strand 4
F
88 91parallel
Strand 5
F
110 115parallel
Strand 6
F
134 137parallel
Strand 7
F
175 179parallel
Strand 8
F
205 208parallel
Strand 9
F
12 15parallel
Back to list of sheets
Back to top of page

There are 9 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
290 291first strand
Strand 2
F
266 270parallel
Strand 3
F
308 313parallel
Strand 4
F
337 340parallel
Strand 5
F
365 369parallel
Strand 6
F
412 416parallel
Strand 7
F
419 424anti-parallel
Strand 8
F
447 451anti-parallel
Strand 9
F
536 539anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il