Analysis of interatomic Contacts of Structural Units in PDB entry:
3NL5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NL5 entry

There are 3 chains in PDB entry 3NL5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2THR 540
B
 LYS 2THR 540
C
 LYS 2THR 540
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 3NL5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 8Right-handed 310
Helix 2
2
A
26 34Right-handed alpha
Helix 3
3
A
52 68Right-handed alpha
Helix 4
4
A
77 84Right-handed alpha
Helix 5
5
A
97 106Right-handed alpha
Helix 6
6
A
118 126Right-handed alpha
Helix 7
7
A
154 169Right-handed alpha
Helix 8
8
A
186 194Right-handed alpha
Helix 9
9
A
217 230Right-handed alpha
Helix 10
10
A
249 264Right-handed alpha
Helix 11
11
A
275 286Right-handed alpha
Helix 12
12
A
298 304Right-handed alpha
Helix 13
13
A
319 333Right-handed alpha
Helix 14
14
A
347 358Right-handed alpha
Helix 15
15
A
370 378Right-handed alpha
Helix 16
16
A
395 409Right-handed alpha
Helix 17
17
A
426 430Right-handed 310
Helix 18
18
A
455 459Right-handed 310
Helix 19
19
A
463 479Right-handed alpha
Helix 20
20
A
484 506Right-handed alpha
Helix 21
21
A
509 528Right-handed alpha
Helix 22
22
B
4 8Right-handed 310
Helix 23
23
B
26 34Right-handed alpha
Helix 24
24
B
52 67Right-handed alpha
Helix 25
25
B
79 85Right-handed alpha
Helix 26
26
B
97 106Right-handed alpha
Helix 27
27
B
118 126Right-handed alpha
Helix 28
28
B
154 169Right-handed alpha
Helix 29
29
B
186 194Right-handed alpha
Helix 30
30
B
217 230Right-handed alpha
Helix 31
31
B
249 264Right-handed alpha
Helix 32
32
B
274 286Right-handed alpha
Helix 33
33
B
298 303Right-handed alpha
Helix 34
34
B
319 332Right-handed alpha
Helix 35
35
B
347 358Right-handed alpha
Helix 36
36
B
371 377Right-handed alpha
Helix 37
37
B
396 409Right-handed alpha
Helix 38
38
B
426 430Right-handed 310
Helix 39
39
B
455 459Right-handed 310
Helix 40
40
B
463 479Right-handed alpha
Helix 41
41
B
484 506Right-handed alpha
Helix 42
42
B
510 528Right-handed alpha
Helix 43
43
C
4 8Right-handed 310
Helix 44
44
C
27 34Right-handed alpha
Helix 45
45
C
50 68Right-handed alpha
Helix 46
46
C
77 84Right-handed alpha
Helix 47
47
C
97 106Right-handed alpha
Helix 48
48
C
117 126Right-handed alpha
Helix 49
49
C
156 166Right-handed alpha
Helix 50
50
C
186 194Right-handed alpha
Helix 51
51
C
209 214Right-handed alpha
Helix 52
52
C
217 231Right-handed alpha
Helix 53
53
C
249 264Right-handed alpha
Helix 54
54
C
274 285Right-handed alpha
Helix 55
55
C
298 303Right-handed alpha
Helix 56
56
C
319 333Right-handed alpha
Helix 57
57
C
347 358Right-handed alpha
Helix 58
58
C
370 378Right-handed alpha
Helix 59
59
C
395 409Right-handed alpha
Helix 60
60
C
426 430Right-handed 310
Helix 61
61
C
455 459Right-handed 310
Helix 62
62
C
463 479Right-handed alpha
Helix 63
63
C
484 506Right-handed alpha
Helix 64
64
C
510 528Right-handed alpha
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There are 6 sheets in PDB entry 3NL5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
42 44parallel
Strand 3
A
72 74parallel
Strand 4
A
88 91parallel
Strand 5
A
110 115parallel
Strand 6
A
134 137parallel
Strand 7
A
175 178parallel
Strand 8
A
205 208parallel
Strand 9
A
12 16parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
266 270parallel
Strand 3
A
309 313parallel
Strand 4
A
337 340parallel
Strand 5
A
365 369parallel
Strand 6
A
412 416parallel
Strand 7
A
419 424anti-parallel
Strand 8
A
447 451anti-parallel
Strand 9
A
536 539anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 15first strand
Strand 2
B
42 44parallel
Strand 3
B
72 74parallel
Strand 4
B
88 91parallel
Strand 5
B
110 115parallel
Strand 6
B
134 137parallel
Strand 7
B
175 179parallel
Strand 8
B
205 208parallel
Strand 9
B
12 15parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 291first strand
Strand 2
B
267 270parallel
Strand 3
B
309 313parallel
Strand 4
B
337 340parallel
Strand 5
B
365 369parallel
Strand 6
B
412 416parallel
Strand 7
B
419 424anti-parallel
Strand 8
B
448 451anti-parallel
Strand 9
B
536 539anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 15first strand
Strand 2
C
42 43parallel
Strand 3
C
72 73parallel
Strand 4
C
88 91parallel
Strand 5
C
110 115parallel
Strand 6
C
134 137parallel
Strand 7
C
175 179parallel
Strand 8
C
206 208parallel
Strand 9
C
12 15parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
289 291first strand
Strand 2
C
266 270parallel
Strand 3
C
309 313parallel
Strand 4
C
337 340parallel
Strand 5
C
365 369parallel
Strand 6
C
412 416parallel
Strand 7
C
419 424anti-parallel
Strand 8
C
447 451anti-parallel
Strand 9
C
536 539anti-parallel
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