Analysis of interatomic Contacts of Structural Units in PDB entry:
3NL6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NL6 entry

There are 3 chains in PDB entry 3NL6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2THR 540
B
 LYS 2THR 540
C
 PHE 3THR 540
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 3NL6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 8Right-handed 310
Helix 2
2
A
26 37Right-handed alpha
Helix 3
3
A
52 68Right-handed alpha
Helix 4
4
A
78 84Right-handed alpha
Helix 5
5
A
97 106Right-handed alpha
Helix 6
6
A
117 127Right-handed alpha
Helix 7
7
A
154 169Right-handed alpha
Helix 8
8
A
186 194Right-handed alpha
Helix 9
9
A
209 214Right-handed alpha
Helix 10
10
A
217 231Right-handed alpha
Helix 11
11
A
249 264Right-handed alpha
Helix 12
12
A
275 286Right-handed alpha
Helix 13
13
A
295 303Right-handed alpha
Helix 14
14
A
319 332Right-handed alpha
Helix 15
15
A
347 358Right-handed alpha
Helix 16
16
A
369 377Right-handed alpha
Helix 17
17
A
395 409Right-handed alpha
Helix 18
18
A
426 430Right-handed 310
Helix 19
19
A
455 460Right-handed 310
Helix 20
20
A
463 478Right-handed alpha
Helix 21
21
A
484 507Right-handed alpha
Helix 22
22
A
509 527Right-handed alpha
Helix 23
23
A
529 533Right-handed 310
Helix 24
24
B
4 8Right-handed 310
Helix 25
25
B
26 36Right-handed alpha
Helix 26
26
B
50 68Right-handed alpha
Helix 27
27
B
77 84Right-handed alpha
Helix 28
28
B
97 106Right-handed alpha
Helix 29
29
B
117 126Right-handed alpha
Helix 30
30
B
154 169Right-handed alpha
Helix 31
31
B
186 194Right-handed alpha
Helix 32
32
B
209 214Right-handed alpha
Helix 33
33
B
217 231Right-handed alpha
Helix 34
34
B
249 264Right-handed alpha
Helix 35
35
B
275 286Right-handed alpha
Helix 36
36
B
295 305Right-handed alpha
Helix 37
37
B
319 333Right-handed alpha
Helix 38
38
B
347 359Right-handed alpha
Helix 39
39
B
369 377Right-handed alpha
Helix 40
40
B
395 409Right-handed alpha
Helix 41
41
B
426 430Right-handed 310
Helix 42
42
B
455 460Right-handed 310
Helix 43
43
B
463 478Right-handed alpha
Helix 44
44
B
484 507Right-handed alpha
Helix 45
45
B
509 527Right-handed alpha
Helix 46
46
B
529 533Right-handed 310
Helix 47
47
C
4 8Right-handed 310
Helix 48
48
C
26 37Right-handed alpha
Helix 49
49
C
50 67Right-handed alpha
Helix 50
50
C
77 85Right-handed alpha
Helix 51
51
C
97 106Right-handed alpha
Helix 52
52
C
117 127Right-handed alpha
Helix 53
53
C
154 170Right-handed alpha
Helix 54
54
C
186 194Right-handed alpha
Helix 55
55
C
217 231Right-handed alpha
Helix 56
56
C
249 264Right-handed alpha
Helix 57
57
C
274 286Right-handed alpha
Helix 58
58
C
298 303Right-handed alpha
Helix 59
59
C
319 333Right-handed alpha
Helix 60
60
C
347 358Right-handed alpha
Helix 61
61
C
369 377Right-handed alpha
Helix 62
62
C
396 409Right-handed alpha
Helix 63
63
C
426 430Right-handed 310
Helix 64
64
C
455 460Right-handed 310
Helix 65
65
C
463 478Right-handed alpha
Helix 66
66
C
484 507Right-handed alpha
Helix 67
67
C
509 528Right-handed alpha
Helix 68
68
C
529 533Right-handed 310
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There are 6 sheets in PDB entry 3NL6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
41 44parallel
Strand 3
A
72 74parallel
Strand 4
A
88 91parallel
Strand 5
A
110 115parallel
Strand 6
A
134 137parallel
Strand 7
A
175 179parallel
Strand 8
A
206 208parallel
Strand 9
A
12 15parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
266 270parallel
Strand 3
A
309 313parallel
Strand 4
A
337 340parallel
Strand 5
A
365 368parallel
Strand 6
A
412 415parallel
Strand 7
A
420 424anti-parallel
Strand 8
A
447 451anti-parallel
Strand 9
A
536 539anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 15first strand
Strand 2
B
41 45parallel
Strand 3
B
72 75parallel
Strand 4
B
88 91parallel
Strand 5
B
110 115parallel
Strand 6
B
134 137parallel
Strand 7
B
175 179parallel
Strand 8
B
206 208parallel
Strand 9
B
12 15parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 291first strand
Strand 2
B
266 270parallel
Strand 3
B
308 313parallel
Strand 4
B
337 340parallel
Strand 5
B
365 368parallel
Strand 6
B
412 415parallel
Strand 7
B
420 424anti-parallel
Strand 8
B
447 451anti-parallel
Strand 9
B
536 539anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 15first strand
Strand 2
C
41 44parallel
Strand 3
C
72 75parallel
Strand 4
C
88 91parallel
Strand 5
C
110 115parallel
Strand 6
C
134 137parallel
Strand 7
C
175 179parallel
Strand 8
C
205 208parallel
Strand 9
C
13 15parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
289 291first strand
Strand 2
C
266 270parallel
Strand 3
C
309 313parallel
Strand 4
C
337 340parallel
Strand 5
C
365 368parallel
Strand 6
C
412 415parallel
Strand 7
C
420 424anti-parallel
Strand 8
C
447 450anti-parallel
Strand 9
C
537 539anti-parallel
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