Analysis of interatomic Contacts of Structural Units in PDB entry:
3NLC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NLC entry

There is 1 chain in PDB entry 3NLC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ASN 538
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3NLC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 27Right-handed alpha
Helix 2
2
A
29 31Right-handed 310
Helix 3
3
A
64 71Right-handed alpha
Helix 4
4
A
106 119Right-handed alpha
Helix 5
5
A
131 146Right-handed alpha
Helix 6
6
A
159 163Right-handed 310
Helix 7
7
A
178 190Right-handed alpha
Helix 8
8
A
193 198Right-handed 310
Helix 9
9
A
205 223Right-handed alpha
Helix 10
10
A
267 277Right-handed alpha
Helix 11
11
A
296 304Right-handed alpha
Helix 12
12
A
385 402Right-handed alpha
Helix 13
13
A
413 419Right-handed alpha
Helix 14
14
A
440 444Right-handed 310
Helix 15
15
A
446 462Right-handed alpha
Helix 16
16
A
504 509Right-handed alpha
Helix 17
17
A
513 537Right-handed alpha
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There are 6 sheets in PDB entry 3NLC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 43first strand
Strand 2
A
52 61anti-parallel
Strand 3
A
2 10anti-parallel
Strand 4
A
78 80anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 228first strand
Strand 2
A
124 126parallel
Strand 3
A
101 103parallel
Strand 4
A
259 261parallel
Strand 5
A
501 503parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 238first strand
Strand 2
A
243 248anti-parallel
Strand 3
A
253 255anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
485 486anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 323first strand
Strand 2
A
329 343anti-parallel
Strand 3
A
353 356anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 323first strand
Strand 2
A
329 343anti-parallel
Strand 3
A
365 374anti-parallel
Strand 4
A
286 295anti-parallel
Strand 5
A
473 478anti-parallel
Strand 6
A
408 412anti-parallel
Strand 7
A
436 438parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il