Analysis of interatomic Contacts of Structural Units in PDB entry:
3NM1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NM1 entry

There are 6 chains in PDB entry 3NM1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2THR 540
B
 LYS 2THR 540
C
 LYS 2THR 540
D
 LYS 2THR 540
E
 LYS 2THR 540
F
 LYS 2THR 540
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are139 helices in PDB entry 3NM1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 8Right-handed 310
Helix 2
2
A
26 36Right-handed alpha
Helix 3
3
A
50 68Right-handed alpha
Helix 4
4
A
77 84Right-handed alpha
Helix 5
5
A
97 104Right-handed alpha
Helix 6
6
A
117 128Right-handed alpha
Helix 7
7
A
154 164Right-handed alpha
Helix 8
8
A
164 169Right-handed alpha
Helix 9
9
A
183 194Right-handed alpha
Helix 10
10
A
217 231Right-handed alpha
Helix 11
11
A
249 264Right-handed alpha
Helix 12
12
A
275 286Right-handed alpha
Helix 13
13
A
298 303Right-handed alpha
Helix 14
14
A
319 332Right-handed alpha
Helix 15
15
A
343 346Right-handed 310
Helix 16
16
A
347 358Right-handed alpha
Helix 17
17
A
370 377Right-handed alpha
Helix 18
18
A
395 409Right-handed alpha
Helix 19
19
A
426 430Right-handed 310
Helix 20
20
A
441 445Right-handed 310
Helix 21
21
A
466 479Right-handed alpha
Helix 22
22
A
484 506Right-handed alpha
Helix 23
23
A
509 527Right-handed alpha
Helix 24
24
A
529 533Right-handed 310
Helix 25
25
B
4 8Right-handed 310
Helix 26
26
B
26 38Right-handed alpha
Helix 27
27
B
50 67Right-handed alpha
Helix 28
28
B
78 85Right-handed alpha
Helix 29
29
B
97 104Right-handed alpha
Helix 30
30
B
117 126Right-handed alpha
Helix 31
31
B
154 169Right-handed alpha
Helix 32
32
B
186 194Right-handed alpha
Helix 33
33
B
217 230Right-handed alpha
Helix 34
34
B
249 263Right-handed alpha
Helix 35
35
B
275 286Right-handed alpha
Helix 36
36
B
298 305Right-handed alpha
Helix 37
37
B
319 332Right-handed alpha
Helix 38
38
B
343 346Right-handed 310
Helix 39
39
B
347 359Right-handed alpha
Helix 40
40
B
370 378Right-handed alpha
Helix 41
41
B
395 409Right-handed alpha
Helix 42
42
B
426 430Right-handed 310
Helix 43
43
B
466 479Right-handed alpha
Helix 44
44
B
484 507Right-handed alpha
Helix 45
45
B
509 527Right-handed alpha
Helix 46
46
B
529 533Right-handed 310
Helix 47
47
C
4 8Right-handed 310
Helix 48
48
C
26 37Right-handed alpha
Helix 49
49
C
50 67Right-handed alpha
Helix 50
50
C
77 85Right-handed alpha
Helix 51
51
C
97 103Right-handed alpha
Helix 52
52
C
117 126Right-handed alpha
Helix 53
53
C
154 169Right-handed alpha
Helix 54
54
C
186 194Right-handed alpha
Helix 55
55
C
217 230Right-handed alpha
Helix 56
56
C
249 264Right-handed alpha
Helix 57
57
C
273 286Right-handed alpha
Helix 58
58
C
298 305Right-handed alpha
Helix 59
59
C
319 332Right-handed alpha
Helix 60
60
C
343 346Right-handed 310
Helix 61
61
C
347 358Right-handed alpha
Helix 62
62
C
370 378Right-handed alpha
Helix 63
63
C
395 409Right-handed alpha
Helix 64
64
C
426 430Right-handed 310
Helix 65
65
C
441 445Right-handed 310
Helix 66
66
C
466 479Right-handed alpha
Helix 67
67
C
484 507Right-handed alpha
Helix 68
68
C
509 527Right-handed alpha
Helix 69
69
C
529 533Right-handed 310
Helix 70
70
D
4 8Right-handed 310
Helix 71
71
D
26 38Right-handed alpha
Helix 72
72
D
50 67Right-handed alpha
Helix 73
73
D
77 85Right-handed alpha
Helix 74
74
D
97 106Right-handed alpha
Helix 75
75
D
117 126Right-handed alpha
Helix 76
76
D
154 164Right-handed alpha
Helix 77
77
D
164 169Right-handed alpha
Helix 78
78
D
186 194Right-handed alpha
Helix 79
79
D
209 214Right-handed alpha
Helix 80
80
D
217 230Right-handed alpha
Helix 81
81
D
249 262Right-handed alpha
Helix 82
82
D
273 286Right-handed alpha
Helix 83
83
D
298 305Right-handed alpha
Helix 84
84
D
319 333Right-handed alpha
Helix 85
85
D
347 358Right-handed alpha
Helix 86
86
D
370 377Right-handed alpha
Helix 87
87
D
395 409Right-handed alpha
Helix 88
88
D
426 430Right-handed 310
Helix 89
89
D
441 445Right-handed 310
Helix 90
90
D
466 479Right-handed alpha
Helix 91
91
D
484 507Right-handed alpha
Helix 92
92
D
509 527Right-handed alpha
Helix 93
93
D
529 533Right-handed 310
Helix 94
94
E
4 8Right-handed 310
Helix 95
95
E
26 34Right-handed alpha
Helix 96
96
E
50 67Right-handed alpha
Helix 97
97
E
77 84Right-handed alpha
Helix 98
98
E
97 104Right-handed alpha
Helix 99
99
E
117 126Right-handed alpha
Helix 100
100
E
154 166Right-handed alpha
Helix 101
101
E
186 194Right-handed alpha
Helix 102
102
E
209 214Right-handed alpha
Helix 103
103
E
217 230Right-handed alpha
Helix 104
104
E
249 262Right-handed alpha
Helix 105
105
E
275 286Right-handed alpha
Helix 106
106
E
298 305Right-handed alpha
Helix 107
107
E
319 333Right-handed alpha
Helix 108
108
E
348 358Right-handed alpha
Helix 109
109
E
370 377Right-handed alpha
Helix 110
110
E
395 409Right-handed alpha
Helix 111
111
E
426 430Right-handed 310
Helix 112
112
E
441 445Right-handed 310
Helix 113
113
E
466 479Right-handed alpha
Helix 114
114
E
484 507Right-handed alpha
Helix 115
115
E
509 527Right-handed alpha
Helix 116
116
E
529 533Right-handed 310
Helix 117
117
F
4 8Right-handed 310
Helix 118
118
F
26 38Right-handed alpha
Helix 119
119
F
50 67Right-handed alpha
Helix 120
120
F
77 85Right-handed alpha
Helix 121
121
F
97 103Right-handed alpha
Helix 122
122
F
117 126Right-handed alpha
Helix 123
123
F
154 169Right-handed alpha
Helix 124
124
F
186 194Right-handed alpha
Helix 125
125
F
209 214Right-handed alpha
Helix 126
126
F
217 230Right-handed alpha
Helix 127
127
F
249 264Right-handed alpha
Helix 128
128
F
273 286Right-handed alpha
Helix 129
129
F
298 303Right-handed alpha
Helix 130
130
F
319 333Right-handed alpha
Helix 131
131
F
348 358Right-handed alpha
Helix 132
132
F
370 378Right-handed alpha
Helix 133
133
F
395 409Right-handed alpha
Helix 134
134
F
426 430Right-handed 310
Helix 135
135
F
441 445Right-handed 310
Helix 136
136
F
466 479Right-handed alpha
Helix 137
137
F
484 507Right-handed alpha
Helix 138
138
F
511 527Right-handed alpha
Helix 139
139
F
529 533Right-handed 310
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There are 12 sheets in PDB entry 3NM1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
41 44parallel
Strand 3
A
72 75parallel
Strand 4
A
88 91parallel
Strand 5
A
110 115parallel
Strand 6
A
134 137parallel
Strand 7
A
175 179parallel
Strand 8
A
205 208parallel
Strand 9
A
12 15parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
266 270parallel
Strand 3
A
309 312parallel
Strand 4
A
337 339parallel
Strand 5
A
365 369parallel
Strand 6
A
412 416parallel
Strand 7
A
420 424anti-parallel
Strand 8
A
447 451anti-parallel
Strand 9
A
536 539anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 15first strand
Strand 2
B
41 44parallel
Strand 3
B
72 75parallel
Strand 4
B
88 91parallel
Strand 5
B
110 115parallel
Strand 6
B
134 137parallel
Strand 7
B
175 179parallel
Strand 8
B
206 208parallel
Strand 9
B
12 15parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 291first strand
Strand 2
B
266 270parallel
Strand 3
B
309 313parallel
Strand 4
B
337 340parallel
Strand 5
B
365 369parallel
Strand 6
B
412 416parallel
Strand 7
B
420 424anti-parallel
Strand 8
B
447 451anti-parallel
Strand 9
B
536 539anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 15first strand
Strand 2
C
41 44parallel
Strand 3
C
73 75parallel
Strand 4
C
88 91parallel
Strand 5
C
110 115parallel
Strand 6
C
134 137parallel
Strand 7
C
175 179parallel
Strand 8
C
206 208parallel
Strand 9
C
12 15parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
289 291first strand
Strand 2
C
266 270parallel
Strand 3
C
308 312parallel
Strand 4
C
337 339parallel
Strand 5
C
365 369parallel
Strand 6
C
412 416parallel
Strand 7
C
420 424anti-parallel
Strand 8
C
447 451anti-parallel
Strand 9
C
536 539anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 15first strand
Strand 2
D
41 44parallel
Strand 3
D
73 75parallel
Strand 4
D
88 91parallel
Strand 5
D
110 115parallel
Strand 6
D
134 139parallel
Strand 7
D
175 179parallel
Strand 8
D
205 208parallel
Strand 9
D
12 15parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
289 291first strand
Strand 2
D
266 270parallel
Strand 3
D
309 313parallel
Strand 4
D
337 340parallel
Strand 5
D
365 369parallel
Strand 6
D
412 416parallel
Strand 7
D
420 424anti-parallel
Strand 8
D
447 451anti-parallel
Strand 9
D
536 537anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 15first strand
Strand 2
E
42 44parallel
Strand 3
E
72 75parallel
Strand 4
E
88 91parallel
Strand 5
E
110 115parallel
Strand 6
E
134 137parallel
Strand 7
E
175 179parallel
Strand 8
E
205 208parallel
Strand 9
E
12 15parallel
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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
289 291first strand
Strand 2
E
266 270parallel
Strand 3
E
309 313parallel
Strand 4
E
337 340parallel
Strand 5
E
365 369parallel
Strand 6
E
412 416parallel
Strand 7
E
419 424anti-parallel
Strand 8
E
447 451anti-parallel
Strand 9
E
536 539anti-parallel
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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 15first strand
Strand 2
F
41 44parallel
Strand 3
F
72 75parallel
Strand 4
F
88 91parallel
Strand 5
F
110 115parallel
Strand 6
F
134 137parallel
Strand 7
F
175 179parallel
Strand 8
F
206 208parallel
Strand 9
F
12 15parallel
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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
289 291first strand
Strand 2
F
266 270parallel
Strand 3
F
309 313parallel
Strand 4
F
337 340parallel
Strand 5
F
365 369parallel
Strand 6
F
412 416parallel
Strand 7
F
420 424anti-parallel
Strand 8
F
447 451anti-parallel
Strand 9
F
536 539anti-parallel
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