Analysis of interatomic Contacts of Structural Units in PDB entry:
3NM3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NM3 entry

There are 6 chains in PDB entry 3NM3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2THR 540
B
 LYS 2THR 540
C
 LYS 2THR 540
D
 LYS 2THR 540
E
 LYS 2THR 540
F
 LYS 2THR 540
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are129 helices in PDB entry 3NM3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 36Right-handed alpha
Helix 2
2
A
50 68Right-handed alpha
Helix 3
3
A
77 84Right-handed alpha
Helix 4
4
A
97 106Right-handed alpha
Helix 5
5
A
118 127Right-handed alpha
Helix 6
6
A
154 169Right-handed alpha
Helix 7
7
A
183 194Right-handed alpha
Helix 8
8
A
217 231Right-handed alpha
Helix 9
9
A
249 264Right-handed alpha
Helix 10
10
A
272 286Right-handed alpha
Helix 11
11
A
295 303Right-handed alpha
Helix 12
12
A
319 333Right-handed alpha
Helix 13
13
A
347 358Right-handed alpha
Helix 14
14
A
370 377Right-handed alpha
Helix 15
15
A
395 409Right-handed alpha
Helix 16
16
A
426 430Right-handed 310
Helix 17
17
A
441 445Right-handed 310
Helix 18
18
A
466 479Right-handed alpha
Helix 19
19
A
484 506Right-handed alpha
Helix 20
20
A
509 527Right-handed alpha
Helix 21
21
B
26 36Right-handed alpha
Helix 22
22
B
52 68Right-handed alpha
Helix 23
23
B
77 85Right-handed alpha
Helix 24
24
B
97 106Right-handed alpha
Helix 25
25
B
118 126Right-handed alpha
Helix 26
26
B
154 169Right-handed alpha
Helix 27
27
B
186 194Right-handed alpha
Helix 28
28
B
209 214Right-handed alpha
Helix 29
29
B
217 231Right-handed alpha
Helix 30
30
B
249 264Right-handed alpha
Helix 31
31
B
272 286Right-handed alpha
Helix 32
32
B
297 305Right-handed alpha
Helix 33
33
B
319 333Right-handed alpha
Helix 34
34
B
347 358Right-handed alpha
Helix 35
35
B
370 378Right-handed alpha
Helix 36
36
B
395 409Right-handed alpha
Helix 37
37
B
426 430Right-handed 310
Helix 38
38
B
441 445Right-handed 310
Helix 39
39
B
466 479Right-handed alpha
Helix 40
40
B
484 507Right-handed alpha
Helix 41
41
B
509 526Right-handed alpha
Helix 42
42
B
529 533Right-handed 310
Helix 43
43
C
4 8Right-handed 310
Helix 44
44
C
17 21Right-handed 310
Helix 45
45
C
26 37Right-handed alpha
Helix 46
46
C
50 68Right-handed alpha
Helix 47
47
C
77 84Right-handed alpha
Helix 48
48
C
97 106Right-handed alpha
Helix 49
49
C
118 126Right-handed alpha
Helix 50
50
C
154 169Right-handed alpha
Helix 51
51
C
186 194Right-handed alpha
Helix 52
52
C
217 230Right-handed alpha
Helix 53
53
C
249 264Right-handed alpha
Helix 54
54
C
272 286Right-handed alpha
Helix 55
55
C
298 303Right-handed alpha
Helix 56
56
C
319 333Right-handed alpha
Helix 57
57
C
347 358Right-handed alpha
Helix 58
58
C
370 378Right-handed alpha
Helix 59
59
C
395 409Right-handed alpha
Helix 60
60
C
426 430Right-handed 310
Helix 61
61
C
441 445Right-handed 310
Helix 62
62
C
465 479Right-handed alpha
Helix 63
63
C
484 507Right-handed alpha
Helix 64
64
C
509 527Right-handed alpha
Helix 65
65
C
529 533Right-handed 310
Helix 66
66
D
4 8Right-handed 310
Helix 67
67
D
26 36Right-handed alpha
Helix 68
68
D
52 68Right-handed alpha
Helix 69
69
D
77 85Right-handed alpha
Helix 70
70
D
97 106Right-handed alpha
Helix 71
71
D
118 126Right-handed alpha
Helix 72
72
D
154 169Right-handed alpha
Helix 73
73
D
186 194Right-handed alpha
Helix 74
74
D
217 230Right-handed alpha
Helix 75
75
D
249 263Right-handed alpha
Helix 76
76
D
272 286Right-handed alpha
Helix 77
77
D
298 303Right-handed alpha
Helix 78
78
D
319 333Right-handed alpha
Helix 79
79
D
347 358Right-handed alpha
Helix 80
80
D
370 378Right-handed alpha
Helix 81
81
D
395 409Right-handed alpha
Helix 82
82
D
426 430Right-handed 310
Helix 83
83
D
441 445Right-handed 310
Helix 84
84
D
466 479Right-handed alpha
Helix 85
85
D
484 507Right-handed alpha
Helix 86
86
D
509 527Right-handed alpha
Helix 87
87
D
529 533Right-handed 310
Helix 88
88
E
4 8Right-handed 310
Helix 89
89
E
26 37Right-handed alpha
Helix 90
90
E
50 68Right-handed alpha
Helix 91
91
E
77 84Right-handed alpha
Helix 92
92
E
97 106Right-handed alpha
Helix 93
93
E
117 126Right-handed alpha
Helix 94
94
E
154 169Right-handed alpha
Helix 95
95
E
186 194Right-handed alpha
Helix 96
96
E
217 230Right-handed alpha
Helix 97
97
E
249 263Right-handed alpha
Helix 98
98
E
272 286Right-handed alpha
Helix 99
99
E
298 303Right-handed alpha
Helix 100
100
E
319 333Right-handed alpha
Helix 101
101
E
347 358Right-handed alpha
Helix 102
102
E
370 378Right-handed alpha
Helix 103
103
E
395 409Right-handed alpha
Helix 104
104
E
426 430Right-handed 310
Helix 105
105
E
465 478Right-handed alpha
Helix 106
106
E
484 506Right-handed alpha
Helix 107
107
E
509 527Right-handed alpha
Helix 108
108
E
529 533Right-handed 310
Helix 109
109
F
4 8Right-handed 310
Helix 110
110
F
26 36Right-handed alpha
Helix 111
111
F
52 68Right-handed alpha
Helix 112
112
F
77 84Right-handed alpha
Helix 113
113
F
97 106Right-handed alpha
Helix 114
114
F
118 126Right-handed alpha
Helix 115
115
F
154 169Right-handed alpha
Helix 116
116
F
186 194Right-handed alpha
Helix 117
117
F
217 231Right-handed alpha
Helix 118
118
F
249 264Right-handed alpha
Helix 119
119
F
275 286Right-handed alpha
Helix 120
120
F
298 303Right-handed alpha
Helix 121
121
F
319 333Right-handed alpha
Helix 122
122
F
347 358Right-handed alpha
Helix 123
123
F
370 378Right-handed alpha
Helix 124
124
F
395 409Right-handed alpha
Helix 125
125
F
426 430Right-handed 310
Helix 126
126
F
466 479Right-handed alpha
Helix 127
127
F
484 506Right-handed alpha
Helix 128
128
F
509 527Right-handed alpha
Helix 129
129
F
529 533Right-handed 310
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There are 12 sheets in PDB entry 3NM3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
41 45parallel
Strand 3
A
72 75parallel
Strand 4
A
88 91parallel
Strand 5
A
110 115parallel
Strand 6
A
134 137parallel
Strand 7
A
175 179parallel
Strand 8
A
205 208parallel
Strand 9
A
12 15parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
267 270parallel
Strand 3
A
309 313parallel
Strand 4
A
337 340parallel
Strand 5
A
365 369parallel
Strand 6
A
412 416parallel
Strand 7
A
419 424anti-parallel
Strand 8
A
447 451anti-parallel
Strand 9
A
538 539anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 15first strand
Strand 2
B
41 45parallel
Strand 3
B
72 75parallel
Strand 4
B
88 91parallel
Strand 5
B
110 115parallel
Strand 6
B
134 137parallel
Strand 7
B
175 179parallel
Strand 8
B
205 208parallel
Strand 9
B
12 15parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 291first strand
Strand 2
B
266 270parallel
Strand 3
B
309 313parallel
Strand 4
B
337 340parallel
Strand 5
B
365 369parallel
Strand 6
B
412 416parallel
Strand 7
B
419 424anti-parallel
Strand 8
B
447 451anti-parallel
Strand 9
B
536 539anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 15first strand
Strand 2
C
41 45parallel
Strand 3
C
72 75parallel
Strand 4
C
88 91parallel
Strand 5
C
110 115parallel
Strand 6
C
134 137parallel
Strand 7
C
175 179parallel
Strand 8
C
206 208parallel
Strand 9
C
12 15parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
289 291first strand
Strand 2
C
266 270parallel
Strand 3
C
308 313parallel
Strand 4
C
337 340parallel
Strand 5
C
365 369parallel
Strand 6
C
412 416parallel
Strand 7
C
419 424anti-parallel
Strand 8
C
447 451anti-parallel
Strand 9
C
536 539anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 15first strand
Strand 2
D
41 45parallel
Strand 3
D
72 75parallel
Strand 4
D
88 91parallel
Strand 5
D
110 115parallel
Strand 6
D
134 137parallel
Strand 7
D
175 179parallel
Strand 8
D
205 208parallel
Strand 9
D
12 15parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
289 291first strand
Strand 2
D
266 270parallel
Strand 3
D
308 312parallel
Strand 4
D
337 339parallel
Strand 5
D
365 369parallel
Strand 6
D
412 416parallel
Strand 7
D
420 424anti-parallel
Strand 8
D
447 450anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 15first strand
Strand 2
E
41 45parallel
Strand 3
E
72 75parallel
Strand 4
E
88 91parallel
Strand 5
E
110 115parallel
Strand 6
E
134 137parallel
Strand 7
E
175 179parallel
Strand 8
E
205 208parallel
Strand 9
E
12 15parallel
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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
289 291first strand
Strand 2
E
266 270parallel
Strand 3
E
308 313parallel
Strand 4
E
337 340parallel
Strand 5
E
365 369parallel
Strand 6
E
412 416parallel
Strand 7
E
419 424anti-parallel
Strand 8
E
447 451anti-parallel
Strand 9
E
536 539anti-parallel
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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 15first strand
Strand 2
F
41 45parallel
Strand 3
F
72 75parallel
Strand 4
F
88 91parallel
Strand 5
F
110 115parallel
Strand 6
F
134 137parallel
Strand 7
F
175 179parallel
Strand 8
F
205 207parallel
Strand 9
F
12 15parallel
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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
289 291first strand
Strand 2
F
266 270parallel
Strand 3
F
308 313parallel
Strand 4
F
337 340parallel
Strand 5
F
365 369parallel
Strand 6
F
412 416parallel
Strand 7
F
420 424anti-parallel
Strand 8
F
447 451anti-parallel
Strand 9
F
536 539anti-parallel
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