Analysis of interatomic Contacts of Structural Units in PDB entry:
3NM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NM5 entry

There are 2 chains in PDB entry 3NM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2LEU 230
B
 GLN 2LEU 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3NM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 22Right-handed alpha
Helix 2
2
A
53 69Right-handed alpha
Helix 3
3
A
104 108Right-handed 310
Helix 4
4
A
124 138Right-handed alpha
Helix 5
5
A
156 168Right-handed alpha
Helix 6
6
A
175 187Right-handed alpha
Helix 7
7
A
203 229Right-handed alpha
Helix 8
8
B
10 22Right-handed alpha
Helix 9
9
B
53 69Right-handed alpha
Helix 10
10
B
104 108Right-handed 310
Helix 11
11
B
124 138Right-handed alpha
Helix 12
12
B
156 168Right-handed alpha
Helix 13
13
B
175 187Right-handed alpha
Helix 14
14
B
203 230Right-handed alpha
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There are 4 sheets in PDB entry 3NM5. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 30first strand
Strand 2
A
33 40anti-parallel
Strand 3
A
43 49anti-parallel
Strand 4
A
3 8parallel
Strand 5
A
72 81parallel
Strand 6
A
171 173anti-parallel
Strand 7
A
143 149parallel
Strand 8
A
91 99parallel
Strand 9
A
121 122anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 30first strand
Strand 2
A
33 40anti-parallel
Strand 3
A
43 49anti-parallel
Strand 4
A
3 8parallel
Strand 5
A
72 81parallel
Strand 6
A
190 198parallel
Strand 7
A
91 99anti-parallel
Strand 8
A
121 122anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
33 40anti-parallel
Strand 3
B
43 49anti-parallel
Strand 4
B
3 8parallel
Strand 5
B
72 81parallel
Strand 6
B
169 173anti-parallel
Strand 7
B
143 149parallel
Strand 8
B
91 99parallel
Strand 9
B
120 122anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
33 40anti-parallel
Strand 3
B
43 49anti-parallel
Strand 4
B
3 8parallel
Strand 5
B
72 81parallel
Strand 6
B
190 198parallel
Strand 7
B
91 99anti-parallel
Strand 8
B
120 122anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il