Analysis of interatomic Contacts of Structural Units in PDB entry:
3NMN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NMN entry

There are 4 chains in PDB entry 3NMN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 35ASN 209
B
VAL 126PRO 424
C
SER 35ASN 211
D
SER 125PRO 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3NMN. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
35 48Right-handed alpha
Helix 2
2
A
68 77Right-handed alpha
Helix 3
3
A
81 85Right-handed 310
Helix 4
4
A
182 209Right-handed alpha
Helix 5
5
B
182 204Right-handed alpha
Helix 6
6
B
210 234Right-handed alpha
Helix 7
7
B
283 294Right-handed alpha
Helix 8
8
B
318 321Right-handed 310
Helix 9
9
B
346 351Right-handed alpha
Helix 10
10
B
354 370Right-handed alpha
Helix 11
11
B
392 409Right-handed alpha
Helix 12
12
C
36 47Right-handed alpha
Helix 13
13
C
68 77Right-handed alpha
Helix 14
14
C
81 85Right-handed 310
Helix 15
15
C
182 209Right-handed alpha
Helix 16
16
D
150 154Right-handed 310
Helix 17
17
D
182 202Right-handed alpha
Helix 18
18
D
206 209Right-handed 310
Helix 19
19
D
210 233Right-handed alpha
Helix 20
20
D
283 294Right-handed alpha
Helix 21
21
D
318 321Right-handed 310
Helix 22
22
D
346 351Right-handed alpha
Helix 23
23
D
354 370Right-handed alpha
Helix 24
24
D
392 409Right-handed alpha
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There are 10 sheets in PDB entry 3NMN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
56 65first strand
Strand 2
A
166 176anti-parallel
Strand 3
A
148 156anti-parallel
Strand 4
A
132 139anti-parallel
Strand 5
A
118 127anti-parallel
Strand 6
A
105 110anti-parallel
Strand 7
A
89 93anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
128 134first strand
Strand 2
B
415 421anti-parallel
Strand 3
B
339 345anti-parallel
Strand 4
B
263 268anti-parallel
Strand 5
B
272 274anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
143 148first strand
Strand 2
B
171 179anti-parallel
Strand 3
B
241 242anti-parallel
Strand 4
B
315 316anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
143 148first strand
Strand 2
B
171 179anti-parallel
Strand 3
B
244 249anti-parallel
Strand 4
B
253 259anti-parallel
Strand 5
B
329 334anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
297 299first strand
Strand 2
B
303 305anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
56 65first strand
Strand 2
C
166 176anti-parallel
Strand 3
C
148 156anti-parallel
Strand 4
C
132 139anti-parallel
Strand 5
C
118 127anti-parallel
Strand 6
C
105 110anti-parallel
Strand 7
C
89 93anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
129 134first strand
Strand 2
D
415 421anti-parallel
Strand 3
D
339 345anti-parallel
Strand 4
D
263 268anti-parallel
Strand 5
D
271 274anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
143 148first strand
Strand 2
D
171 179anti-parallel
Strand 3
D
241 249anti-parallel
Strand 4
D
315 316anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
143 148first strand
Strand 2
D
171 179anti-parallel
Strand 3
D
241 249anti-parallel
Strand 4
D
253 259anti-parallel
Strand 5
D
329 334anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
297 299first strand
Strand 2
D
303 305anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il