Analysis of interatomic Contacts of Structural Units in PDB entry:
3NMS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3NMS entry

There are 4 chains in PDB entry 3NMS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	ALA 645
C	CYS 1336	ASN 1641
M	THR 2	TYR 85
B	LEU 729	GLU 912

There are 20 helices in PDB entry 3NMS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	263	266	Right-handed 310
Helix 2	2	A	281	290	Right-handed alpha
Helix 3	3	A	294	298	Right-handed 310
Helix 4	4	A	458	463	Right-handed alpha
Helix 5	5	A	500	504	Right-handed 310
Helix 6	6	A	579	583	Right-handed 310
Helix 7	7	A	590	600	Right-handed alpha
Helix 8	8	A	612	620	Right-handed alpha
Helix 9	9	C	1392	1401	Right-handed alpha
Helix 10	10	C	1408	1414	Right-handed alpha
Helix 11	11	C	1415	1419	Right-handed 310
Helix 12	12	C	1506	1514	Right-handed alpha
Helix 13	13	C	1587	1589	Right-handed 310
Helix 14	14	C	1611	1615	Right-handed 310
Helix 15	15	C	1620	1636	Right-handed alpha
Helix 16	16	M	6	25	Right-handed alpha
Helix 17	17	M	25	33	Right-handed alpha
Helix 18	18	M	37	58	Right-handed alpha
Helix 19	19	M	59	74	Right-handed alpha
Helix 20	20	M	77	83	Right-handed alpha

There are 24 sheets in PDB entry 3NMS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	67	first strand
Strand 2	A	17	25	anti-parallel
Strand 3	A	3	8	anti-parallel
Strand 4	A	623	626	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	93	102	parallel
Strand 3	A	83	90	anti-parallel
Strand 4	A	31	39	anti-parallel
Strand 5	A	51	54	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	112	first strand
Strand 2	A	123	131	anti-parallel
Strand 3	A	166	167	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	112	first strand
Strand 2	A	123	131	anti-parallel
Strand 3	A	170	171	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	201	202	parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	159	first strand
Strand 2	A	140	146	anti-parallel
Strand 3	A	183	188	anti-parallel
Strand 4	A	191	198	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	216	first strand
Strand 2	A	229	237	anti-parallel
Strand 3	A	275	280	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	316	327	parallel
Strand 3	A	301	310	anti-parallel
Strand 4	A	245	255	anti-parallel
Strand 5	A	258	261	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	316	327	parallel
Strand 3	A	301	310	anti-parallel
Strand 4	A	245	255	anti-parallel
Strand 5	A	267	271	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	334	first strand
Strand 2	A	347	355	anti-parallel
Strand 3	A	384	390	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	342	first strand
Strand 2	A	416	423	parallel
Strand 3	A	398	404	anti-parallel
Strand 4	A	367	369	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	438	first strand
Strand 2	A	448	456	anti-parallel
Strand 3	A	492	498	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	485	first strand
Strand 2	A	467	474	anti-parallel
Strand 3	A	506	517	anti-parallel
Strand 4	A	521	532	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	545	first strand
Strand 2	A	558	566	anti-parallel
Strand 3	B	764	772	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	748	749	first strand
Strand 2	A	570	577	anti-parallel
Strand 3	B	779	788	anti-parallel
Strand 4	B	792	794	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	753	755	first strand
Strand 2	A	570	577	anti-parallel
Strand 3	B	779	788	anti-parallel
Strand 4	B	799	802	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1339	1347	first strand
Strand 2	C	1362	1370	anti-parallel
Strand 3	C	1438	1441	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1405	1406	first strand
Strand 2	C	1421	1426	anti-parallel
Strand 3	C	1379	1384	anti-parallel
Strand 4	C	1454	1459	anti-parallel
Strand 5	C	1467	1470	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1482	1484	first strand
Strand 2	C	1489	1491	anti-parallel

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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1597	1599	first strand
Strand 2	C	1559	1565	parallel
Strand 3	C	1536	1548	anti-parallel
Strand 4	C	1519	1529	anti-parallel
Strand 5	C	1579	1585	anti-parallel
Strand 6	C	1605	1609	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	807	812	first strand
Strand 2	B	823	831	anti-parallel
Strand 3	B	870	873	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	807	812	first strand
Strand 2	B	823	831	anti-parallel
Strand 3	B	876	878	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	816	818	first strand
Strand 2	B	908	910	parallel
Strand 3	B	884	885	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	860	866	first strand
Strand 2	B	838	844	anti-parallel
Strand 3	B	890	894	anti-parallel
Strand 4	B	900	903	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3NMS

Analysis of interatomic Contacts of Structural Units in PDB entry:
3NMS