Analysis of interatomic Contacts of Structural Units in PDB entry:
3NMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NMV entry

There are 2 chains in PDB entry 3NMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 13ASP 188
B
 CYS 109ILE 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3NMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 26Right-handed alpha
Helix 2
2
A
46 56Right-handed alpha
Helix 3
3
A
59 63Right-handed 310
Helix 4
4
A
158 184Right-handed alpha
Helix 5
5
B
153 158Right-handed 310
Helix 6
6
B
170 192Right-handed alpha
Helix 7
7
B
193 196Right-handed 310
Helix 8
8
B
198 223Right-handed alpha
Helix 9
9
B
273 283Right-handed alpha
Helix 10
10
B
308 311Right-handed 310
Helix 11
11
B
336 341Right-handed alpha
Helix 12
12
B
344 361Right-handed alpha
Helix 13
13
B
381 398Right-handed alpha
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There are 5 sheets in PDB entry 3NMV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 43first strand
Strand 2
A
141 152anti-parallel
Strand 3
A
125 134anti-parallel
Strand 4
A
109 117anti-parallel
Strand 5
A
95 104anti-parallel
Strand 6
A
82 87anti-parallel
Strand 7
A
67 74anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 118first strand
Strand 2
B
404 410anti-parallel
Strand 3
B
329 335anti-parallel
Strand 4
B
253 258anti-parallel
Strand 5
B
261 264anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 132first strand
Strand 2
B
159 167anti-parallel
Strand 3
B
231 232anti-parallel
Strand 4
B
305 306anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 132first strand
Strand 2
B
159 167anti-parallel
Strand 3
B
234 239anti-parallel
Strand 4
B
243 249anti-parallel
Strand 5
B
319 324anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 289first strand
Strand 2
B
293 295anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il