Analysis of interatomic Contacts of Structural Units in PDB entry:
3NOD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3NOD entry

There are 2 chains in PDB entry 3NOD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 77GLN 496
B
 GLN 77GLN 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3NOD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
94 97Right-handed 310
Helix 2
2
A
117 119Right-handed 310
Helix 3
3
A
130 147Right-handed alpha
Helix 4
4
A
153 170Right-handed alpha
Helix 5
5
A
177 189Right-handed alpha
Helix 6
6
A
197 199Right-handed 310
Helix 7
7
A
214 232Right-handed alpha
Helix 8
8
A
275 286Right-handed 310
Helix 9
9
A
334 336Right-handed 310
Helix 10
10
A
369 373Right-handed alpha
Helix 11
11
A
375 378Right-handed alpha
Helix 12
12
A
386 393Right-handed alpha
Helix 13
13
A
400 402Right-handed 310
Helix 14
14
A
404 422Right-handed alpha
Helix 15
15
A
430 448Right-handed alpha
Helix 16
16
A
455 458Right-handed alpha
Helix 17
17
A
464 466Right-handed 310
Helix 18
18
A
468 471Right-handed 310
Helix 19
19
B
94 97Right-handed 310
Helix 20
20
B
117 119Right-handed 310
Helix 21
21
B
130 147Right-handed alpha
Helix 22
22
B
153 170Right-handed alpha
Helix 23
23
B
177 189Right-handed alpha
Helix 24
24
B
197 201Right-handed 310
Helix 25
25
B
214 232Right-handed alpha
Helix 26
26
B
275 286Right-handed 310
Helix 27
27
B
317 319Right-handed 310
Helix 28
28
B
331 336Right-handed 310
Helix 29
29
B
369 373Right-handed alpha
Helix 30
30
B
375 378Right-handed alpha
Helix 31
31
B
386 392Right-handed alpha
Helix 32
32
B
400 402Right-handed 310
Helix 33
33
B
404 422Right-handed alpha
Helix 34
34
B
430 448Right-handed alpha
Helix 35
35
B
455 458Right-handed alpha
Helix 36
36
B
464 466Right-handed 310
Helix 37
37
B
468 471Right-handed 310
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There are 11 sheets in PDB entry 3NOD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
89 92anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 208first strand
Strand 2
A
237 241parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
311 313anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 324first strand
Strand 2
A
339 341anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 484first strand
Strand 2
A
350 353anti-parallel
Strand 3
A
356 358anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 82first strand
Strand 2
B
89 92anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 208first strand
Strand 2
B
237 241parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 265first strand
Strand 2
B
271 273anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 303first strand
Strand 2
B
311 313anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 324first strand
Strand 2
B
339 341anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
482 484first strand
Strand 2
B
350 353anti-parallel
Strand 3
B
356 358anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il